26 items (Sparassis crispa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SCP_0601940	Uncharacterized protein. (688 aa)
	SCP_0102740	Uncharacterized protein. (133 aa)
	SCP_0102750	Uncharacterized protein. (790 aa)
	SCP_0204010	Uncharacterized protein. (1369 aa)
	SCP_0206840	Uncharacterized protein. (837 aa)
	SCP_0206830	Uncharacterized protein. (1268 aa)
	SCP_0209660	NIF-domain-containing protein. (541 aa)
	SCP_0209780	Nsp1_C domain-containing protein. (704 aa)
	SCP_0210820	LNS2-domain-containing protein. (1206 aa)
	SCP_0214860	Uncharacterized protein. (2050 aa)
	SCP_0300880	Uncharacterized protein. (1014 aa)
	SCP_0407840	Uncharacterized protein. (1296 aa)
	SCP_0410650	Uncharacterized protein. (209 aa)
	SCP_0700190	Uncharacterized protein. (210 aa)
	SCP_0801590	FCP1 homology domain-containing protein. (627 aa)
	SCP_0102730	Uncharacterized protein. (158 aa)
	SCP_0906330	Uncharacterized protein. (133 aa)
	SCP_0906340	Uncharacterized protein. (836 aa)
	SCP_1001390	Uncharacterized protein. (2330 aa)
	SCP_1003540	Uncharacterized protein. (2117 aa)
	SCP_1401840	Uncharacterized protein. (51 aa)
	SCP_1502240	Uncharacterized protein. (496 aa)
	SCP_1502250	Uncharacterized protein. (536 aa)
	SCP_1900760	Uncharacterized protein. (102 aa)
	SCP_1900780	Uncharacterized protein. (133 aa)
	SCP_1900790	Uncharacterized protein. (809 aa)

Your Current Organism:

Sparassis crispa

NCBI taxonomy Id: 139825
Other names: S. crispa

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SCP_0102730	SCP_0206830	A0A401GX09	A0A401GBH6	Uncharacterized protein.	Uncharacterized protein.	0.731
SCP_0102730	SCP_0206840	A0A401GX09	A0A401GBE2	Uncharacterized protein.	Uncharacterized protein.	0.658
SCP_0102730	SCP_0209780	A0A401GX09	A0A401GC95	Uncharacterized protein.	Nsp1_C domain-containing protein.	0.997
SCP_0102730	SCP_0214860	A0A401GX09	A0A401GDL2	Uncharacterized protein.	Uncharacterized protein.	0.826
SCP_0102730	SCP_0407840	A0A401GX09	A0A401GJR5	Uncharacterized protein.	Uncharacterized protein.	0.718
SCP_0102730	SCP_0410650	A0A401GX09	A0A401GKJ7	Uncharacterized protein.	Uncharacterized protein.	0.658
SCP_0102730	SCP_0601940	A0A401GX09	A0A401GPS3	Uncharacterized protein.	Uncharacterized protein.	0.733
SCP_0102730	SCP_0700190	A0A401GX09	A0A401GRP6	Uncharacterized protein.	Uncharacterized protein.	0.658
SCP_0102730	SCP_1001390	A0A401GX09	A0A401GXE3	Uncharacterized protein.	Uncharacterized protein.	0.768
SCP_0102730	SCP_1003540	A0A401GX09	A0A401GY23	Uncharacterized protein.	Uncharacterized protein.	0.882
SCP_0102740	SCP_0206830	A0A401G5F8	A0A401GBH6	Uncharacterized protein.	Uncharacterized protein.	0.731
SCP_0102740	SCP_0206840	A0A401G5F8	A0A401GBE2	Uncharacterized protein.	Uncharacterized protein.	0.658
SCP_0102740	SCP_0209780	A0A401G5F8	A0A401GC95	Uncharacterized protein.	Nsp1_C domain-containing protein.	0.997
SCP_0102740	SCP_0214860	A0A401G5F8	A0A401GDL2	Uncharacterized protein.	Uncharacterized protein.	0.778
SCP_0102740	SCP_0407840	A0A401G5F8	A0A401GJR5	Uncharacterized protein.	Uncharacterized protein.	0.718
SCP_0102740	SCP_0410650	A0A401G5F8	A0A401GKJ7	Uncharacterized protein.	Uncharacterized protein.	0.658
SCP_0102740	SCP_0601940	A0A401G5F8	A0A401GPS3	Uncharacterized protein.	Uncharacterized protein.	0.733
SCP_0102740	SCP_0700190	A0A401G5F8	A0A401GRP6	Uncharacterized protein.	Uncharacterized protein.	0.658
SCP_0102740	SCP_1001390	A0A401G5F8	A0A401GXE3	Uncharacterized protein.	Uncharacterized protein.	0.768
SCP_0102740	SCP_1003540	A0A401G5F8	A0A401GY23	Uncharacterized protein.	Uncharacterized protein.	0.882