59 items (Sparassis crispa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SCP_0102730	Uncharacterized protein. (158 aa)
	SCP_1900780	Uncharacterized protein. (133 aa)
	SCP_1900760	Uncharacterized protein. (102 aa)
	SCP_1701940	Dimer_Tnp_hAT domain-containing protein. (80 aa)
	SCP_1602390	Zinc finger BED domain-containing protein RICESLEEPER 2. (900 aa)
	SCP_1503280	Uncharacterized protein. (301 aa)
	SCP_1503270	Uncharacterized protein. (692 aa)
	SCP_1502250	Uncharacterized protein. (536 aa)
	SCP_1502240	Uncharacterized protein. (496 aa)
	SCP_1403260	Uncharacterized protein. (692 aa)
	SCP_1204160	Dimer_Tnp_hAT domain-containing protein. (87 aa)
	SCP_1102710	Putative AC9 transposase. (492 aa)
	SCP_1003540	Uncharacterized protein. (2117 aa)
	SCP_1001390	Uncharacterized protein. (2330 aa)
	SCP_1000550	Uncharacterized protein. (542 aa)
	SCP_0906340	Uncharacterized protein. (836 aa)
	SCP_0906330	Uncharacterized protein. (133 aa)
	SCP_0112230	Uncharacterized protein. (295 aa)
	SCP_0112300	Dimer_Tnp_hAT domain-containing protein. (135 aa)
	SCP_0109900	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (531 aa)
	SCP_0108880	Uncharacterized protein. (677 aa)
	SCP_0105040	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	SCP_0104570	Uncharacterized protein. (498 aa)
	SCP_0102750	Uncharacterized protein. (790 aa)
	SCP_0102740	Uncharacterized protein. (133 aa)
	SCP_0201130	Uncharacterized protein. (94 aa)
	SCP_0201350	Uncharacterized protein. (596 aa)
	SCP_0204010	Uncharacterized protein. (1369 aa)
	SCP_0206620	Uncharacterized protein. (146 aa)
	SCP_0206830	Uncharacterized protein. (1268 aa)
	SCP_0209780	Nsp1_C domain-containing protein. (704 aa)
	SCP_0210910	Putative urease accessory protein. (299 aa)
	SCP_0213050	Putative AC9 transposase. (805 aa)
	SCP_0213890	Histone deacetylase RPD3. (547 aa)
	SCP_0214860	Uncharacterized protein. (2050 aa)
	SCP_0301140	Putative AC9 transposase. (508 aa)
	SCP_1900790	Uncharacterized protein. (809 aa)
	SCP_0300880	Uncharacterized protein. (1014 aa)
	SCP_0310390	Dimer_Tnp_hAT domain-containing protein. (211 aa)
	SCP_0405110	SUMO-conjugating enzyme ubc9; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
	SCP_0406310	Dimer_Tnp_hAT domain-containing protein. (114 aa)
	SCP_0406520	Uncharacterized protein. (440 aa)
	SCP_0406560	Putative AC9 transposase. (555 aa)
	SCP_0406710	Putative AC9 transposase. (580 aa)
	SCP_0407840	Uncharacterized protein. (1296 aa)
	SCP_0408020	Uncharacterized protein. (163 aa)
	SCP_0505100	Chromatin structure-remodeling complex subunit RSC7. (578 aa)
	SCP_0507430	F-box domain-containing protein. (373 aa)
	SCP_0601940	Uncharacterized protein. (688 aa)
	SCP_0604950	Dimer_Tnp_hAT domain-containing protein. (1025 aa)
	SCP_0604030	Dimer_Tnp_hAT domain-containing protein. (224 aa)
	SCP_0704120	Uncharacterized protein. (391 aa)
	SCP_0704130	Uncharacterized protein. (239 aa)
	SCP_0803340	Putative AC transposase. (348 aa)
	SCP_0803890	Ubiquitin-like protein. (95 aa)
	SCP_0803950	Dimer_Tnp_hAT domain-containing protein. (255 aa)
	SCP_0804360	Uncharacterized protein. (330 aa)
	SCP_0805770	Ubiquitin-like protein pmt3/smt3. (101 aa)
	SCP_0902410	Dimer_Tnp_hAT domain-containing protein. (1006 aa)

Your Current Organism:

Sparassis crispa

NCBI taxonomy Id: 139825
Other names: S. crispa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SCP_0102730	SCP_0104570	A0A401GX09	A0A401G606	Uncharacterized protein.	Uncharacterized protein.	0.497
SCP_0102730	SCP_0206830	A0A401GX09	A0A401GBH6	Uncharacterized protein.	Uncharacterized protein.	0.731
SCP_0102730	SCP_0209780	A0A401GX09	A0A401GC95	Uncharacterized protein.	Nsp1_C domain-containing protein.	0.997
SCP_0102730	SCP_0214860	A0A401GX09	A0A401GDL2	Uncharacterized protein.	Uncharacterized protein.	0.826
SCP_0102730	SCP_0407840	A0A401GX09	A0A401GJR5	Uncharacterized protein.	Uncharacterized protein.	0.718
SCP_0102730	SCP_0601940	A0A401GX09	A0A401GPS3	Uncharacterized protein.	Uncharacterized protein.	0.733
SCP_0102730	SCP_0803890	A0A401GX09	A0A401GUF6	Uncharacterized protein.	Ubiquitin-like protein.	0.503
SCP_0102730	SCP_0805770	A0A401GX09	A0A401GV39	Uncharacterized protein.	Ubiquitin-like protein pmt3/smt3.	0.503
SCP_0102730	SCP_1001390	A0A401GX09	A0A401GXE3	Uncharacterized protein.	Uncharacterized protein.	0.768
SCP_0102730	SCP_1003540	A0A401GX09	A0A401GY23	Uncharacterized protein.	Uncharacterized protein.	0.882
SCP_0102740	SCP_0104570	A0A401G5F8	A0A401G606	Uncharacterized protein.	Uncharacterized protein.	0.497
SCP_0102740	SCP_0206830	A0A401G5F8	A0A401GBH6	Uncharacterized protein.	Uncharacterized protein.	0.731
SCP_0102740	SCP_0209780	A0A401G5F8	A0A401GC95	Uncharacterized protein.	Nsp1_C domain-containing protein.	0.997
SCP_0102740	SCP_0214860	A0A401G5F8	A0A401GDL2	Uncharacterized protein.	Uncharacterized protein.	0.778
SCP_0102740	SCP_0407840	A0A401G5F8	A0A401GJR5	Uncharacterized protein.	Uncharacterized protein.	0.718
SCP_0102740	SCP_0601940	A0A401G5F8	A0A401GPS3	Uncharacterized protein.	Uncharacterized protein.	0.733
SCP_0102740	SCP_0803890	A0A401G5F8	A0A401GUF6	Uncharacterized protein.	Ubiquitin-like protein.	0.503
SCP_0102740	SCP_0805770	A0A401G5F8	A0A401GV39	Uncharacterized protein.	Ubiquitin-like protein pmt3/smt3.	0.503
SCP_0102740	SCP_1001390	A0A401G5F8	A0A401GXE3	Uncharacterized protein.	Uncharacterized protein.	0.768
SCP_0102740	SCP_1003540	A0A401G5F8	A0A401GY23	Uncharacterized protein.	Uncharacterized protein.	0.882