26 items (Sparassis crispa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SCP_0601940	Uncharacterized protein. (688 aa)
	SCP_0102750	Uncharacterized protein. (790 aa)
	SCP_0102740	Uncharacterized protein. (133 aa)
	SCP_0906330	Uncharacterized protein. (133 aa)
	SCP_0906340	Uncharacterized protein. (836 aa)
	SCP_1001390	Uncharacterized protein. (2330 aa)
	SCP_1003540	Uncharacterized protein. (2117 aa)
	SCP_1502240	Uncharacterized protein. (496 aa)
	SCP_1502250	Uncharacterized protein. (536 aa)
	SCP_1900760	Uncharacterized protein. (102 aa)
	SCP_1900780	Uncharacterized protein. (133 aa)
	SCP_1900790	Uncharacterized protein. (809 aa)
	SCP_0102730	Uncharacterized protein. (158 aa)
	SCP_0805770	Ubiquitin-like protein pmt3/smt3. (101 aa)
	SCP_0803890	Ubiquitin-like protein. (95 aa)
	SCP_0800130	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (380 aa)
	SCP_0407840	Uncharacterized protein. (1296 aa)
	SCP_0405110	SUMO-conjugating enzyme ubc9; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
	SCP_0303220	DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] (907 aa)
	SCP_0300880	Uncharacterized protein. (1014 aa)
	SCP_0214860	Uncharacterized protein. (2050 aa)
	SCP_0209780	Nsp1_C domain-containing protein. (704 aa)
	SCP_0206830	Uncharacterized protein. (1268 aa)
	SCP_0204010	Uncharacterized protein. (1369 aa)
	SCP_0115990	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (1601 aa)
	SCP_0104570	Uncharacterized protein. (498 aa)

Your Current Organism:

Sparassis crispa

NCBI taxonomy Id: 139825
Other names: S. crispa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SCP_0102730	SCP_0104570	A0A401GX09	A0A401G606	Uncharacterized protein.	Uncharacterized protein.	0.497
SCP_0102730	SCP_0206830	A0A401GX09	A0A401GBH6	Uncharacterized protein.	Uncharacterized protein.	0.731
SCP_0102730	SCP_0209780	A0A401GX09	A0A401GC95	Uncharacterized protein.	Nsp1_C domain-containing protein.	0.997
SCP_0102730	SCP_0214860	A0A401GX09	A0A401GDL2	Uncharacterized protein.	Uncharacterized protein.	0.826
SCP_0102730	SCP_0407840	A0A401GX09	A0A401GJR5	Uncharacterized protein.	Uncharacterized protein.	0.718
SCP_0102730	SCP_0601940	A0A401GX09	A0A401GPS3	Uncharacterized protein.	Uncharacterized protein.	0.733
SCP_0102730	SCP_0803890	A0A401GX09	A0A401GUF6	Uncharacterized protein.	Ubiquitin-like protein.	0.503
SCP_0102730	SCP_0805770	A0A401GX09	A0A401GV39	Uncharacterized protein.	Ubiquitin-like protein pmt3/smt3.	0.503
SCP_0102730	SCP_1001390	A0A401GX09	A0A401GXE3	Uncharacterized protein.	Uncharacterized protein.	0.768
SCP_0102730	SCP_1003540	A0A401GX09	A0A401GY23	Uncharacterized protein.	Uncharacterized protein.	0.882
SCP_0102740	SCP_0104570	A0A401G5F8	A0A401G606	Uncharacterized protein.	Uncharacterized protein.	0.497
SCP_0102740	SCP_0206830	A0A401G5F8	A0A401GBH6	Uncharacterized protein.	Uncharacterized protein.	0.731
SCP_0102740	SCP_0209780	A0A401G5F8	A0A401GC95	Uncharacterized protein.	Nsp1_C domain-containing protein.	0.997
SCP_0102740	SCP_0214860	A0A401G5F8	A0A401GDL2	Uncharacterized protein.	Uncharacterized protein.	0.778
SCP_0102740	SCP_0407840	A0A401G5F8	A0A401GJR5	Uncharacterized protein.	Uncharacterized protein.	0.718
SCP_0102740	SCP_0601940	A0A401G5F8	A0A401GPS3	Uncharacterized protein.	Uncharacterized protein.	0.733
SCP_0102740	SCP_0803890	A0A401G5F8	A0A401GUF6	Uncharacterized protein.	Ubiquitin-like protein.	0.503
SCP_0102740	SCP_0805770	A0A401G5F8	A0A401GV39	Uncharacterized protein.	Ubiquitin-like protein pmt3/smt3.	0.503
SCP_0102740	SCP_1001390	A0A401G5F8	A0A401GXE3	Uncharacterized protein.	Uncharacterized protein.	0.768
SCP_0102740	SCP_1003540	A0A401G5F8	A0A401GY23	Uncharacterized protein.	Uncharacterized protein.	0.882