55 items (Sparassis crispa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SCP_1003540	Uncharacterized protein. (2117 aa)
	SCP_0904130	Uncharacterized RNA-binding protein. (166 aa)
	SCP_1001390	Uncharacterized protein. (2330 aa)
	SCP_0906340	Uncharacterized protein. (836 aa)
	SCP_0906330	Uncharacterized protein. (133 aa)
	SCP_0102730	Uncharacterized protein. (158 aa)
	SCP_0904750	Splicing factor U2AF 59 kDa subunit. (614 aa)
	SCP_0804680	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (842 aa)
	SCP_0900180	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (726 aa)
	SCP_0802730	Protein mago nashi homolog. (149 aa)
	SCP_0602850	Uncharacterized protein. (565 aa)
	SCP_0601940	Uncharacterized protein. (688 aa)
	SCP_0509970	PWI domain-containing protein. (528 aa)
	SCP_0504770	WD repeat-containing protein. (402 aa)
	SCP_0503840	Nucleoporin nup44. (670 aa)
	SCP_0500930	TPR_MLP1_2 domain-containing protein. (1955 aa)
	SCP_0403120	Uncharacterized protein. (1194 aa)
	SCP_1603070	RanBD1 domain-containing protein. (733 aa)
	SCP_1502250	Uncharacterized protein. (536 aa)
	SCP_1900790	Uncharacterized protein. (809 aa)
	SCP_1900780	Uncharacterized protein. (133 aa)
	SCP_1900760	Uncharacterized protein. (102 aa)
	SCP_1502240	Uncharacterized protein. (496 aa)
	SCP_1401450	RRM domain-containing protein. (279 aa)
	SCP_1401120	mRNA export protein. (221 aa)
	SCP_1400180	mRNA export protein. (228 aa)
	SCP_1400230	Nup96 domain-containing protein. (877 aa)
	SCP_1300850	Poly(A)+ RNA export protein. (352 aa)
	SCP_1201240	Nucleoporin nup45. (451 aa)
	SCP_1200110	mRNA export factor mex67. (587 aa)
	SCP_1101910	Uncharacterized protein. (440 aa)
	SCP_1101270	Nucleoporin seh1; Belongs to the WD repeat SEC13 family. (424 aa)
	SCP_0309890	Uncharacterized protein. (270 aa)
	SCP_0308890	RanBD1 domain-containing protein. (667 aa)
	SCP_0308410	Pre-mRNA-splicing factor SLU7. (557 aa)
	SCP_0307230	Splicing factor U2AF 23 kDa subunit. (229 aa)
	SCP_0300880	Uncharacterized protein. (1014 aa)
	SCP_0214860	Uncharacterized protein. (2050 aa)
	SCP_0213080	Nucleoporin2-domain-containing protein. (1016 aa)
	SCP_0210760	Uncharacterized protein. (355 aa)
	SCP_0209640	Uncharacterized protein. (355 aa)
	SCP_0209770	Nucleoporin nup82. (848 aa)
	SCP_0207420	Ran-specific GTPase-activating protein. (214 aa)
	SCP_0206830	Uncharacterized protein. (1268 aa)
	SCP_0206600	Uncharacterized THOC5 family. (210 aa)
	SCP_0204010	Uncharacterized protein. (1369 aa)
	SCP_0115780	Nuclear pore protein. (861 aa)
	SCP_0115440	Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16. (1253 aa)
	SCP_0113070	Pre-mRNA-processing factor 17. (580 aa)
	SCP_0109120	Nucleoporin. (1357 aa)
	SCP_0102750	Uncharacterized protein. (790 aa)
	SCP_0102740	Uncharacterized protein. (133 aa)
	SCP_0101980	THO complex subunit 1. (770 aa)
	SCP_0101470	Fip1 domain-containing protein. (608 aa)
	SCP_0101270	NTF2-related export protein. (156 aa)

Your Current Organism:

Sparassis crispa

NCBI taxonomy Id: 139825
Other names: S. crispa

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SCP_0101270	SCP_0101980	A0A401G516	A0A401G584	NTF2-related export protein.	THO complex subunit 1.	0.735
SCP_0101270	SCP_0109120	A0A401G516	A0A401G780	NTF2-related export protein.	Nucleoporin.	0.719
SCP_0101270	SCP_0115780	A0A401G516	A0A401G952	NTF2-related export protein.	Nuclear pore protein.	0.689
SCP_0101270	SCP_0206600	A0A401G516	A0A401GBA7	NTF2-related export protein.	Uncharacterized THOC5 family.	0.745
SCP_0101270	SCP_0206830	A0A401G516	A0A401GBH6	NTF2-related export protein.	Uncharacterized protein.	0.693
SCP_0101270	SCP_0207420	A0A401G516	A0A401GBL2	NTF2-related export protein.	Ran-specific GTPase-activating protein.	0.772
SCP_0101270	SCP_0209640	A0A401G516	A0A401GCB6	NTF2-related export protein.	Uncharacterized protein.	0.737
SCP_0101270	SCP_0210760	A0A401G516	A0A401GCH8	NTF2-related export protein.	Uncharacterized protein.	0.656
SCP_0101270	SCP_0213080	A0A401G516	A0A401GD84	NTF2-related export protein.	Nucleoporin2-domain-containing protein.	0.693
SCP_0101270	SCP_0308890	A0A401G516	A0A401GGD2	NTF2-related export protein.	RanBD1 domain-containing protein.	0.704
SCP_0101270	SCP_0309890	A0A401G516	A0A401GGG9	NTF2-related export protein.	Uncharacterized protein.	0.567
SCP_0101270	SCP_0403120	A0A401G516	A0A401GIF0	NTF2-related export protein.	Uncharacterized protein.	0.692
SCP_0101270	SCP_0500930	A0A401G516	A0A401GLN7	NTF2-related export protein.	TPR_MLP1_2 domain-containing protein.	0.679
SCP_0101270	SCP_0503840	A0A401G516	A0A401GMB2	NTF2-related export protein.	Nucleoporin nup44.	0.700
SCP_0101270	SCP_0602850	A0A401G516	A0A401GQ10	NTF2-related export protein.	Uncharacterized protein.	0.765
SCP_0101270	SCP_0802730	A0A401G516	A0A401GU40	NTF2-related export protein.	Protein mago nashi homolog.	0.631
SCP_0101270	SCP_0804680	A0A401G516	A0A401GW04	NTF2-related export protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.711
SCP_0101270	SCP_0900180	A0A401G516	A0A401GV81	NTF2-related export protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.697
SCP_0101270	SCP_0904130	A0A401G516	A0A401GXM1	NTF2-related export protein.	Uncharacterized RNA-binding protein.	0.617
SCP_0101270	SCP_0904750	A0A401G516	A0A401GWJ6	NTF2-related export protein.	Splicing factor U2AF 59 kDa subunit.	0.559