37 items (Sparassis crispa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SCP_0204010	Uncharacterized protein. (1369 aa)
	SCP_0501100	Ran GTPase-activating protein. (399 aa)
	SCP_0504770	WD repeat-containing protein. (402 aa)
	SCP_0405110	SUMO-conjugating enzyme ubc9; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
	SCP_1502240	Uncharacterized protein. (496 aa)
	SCP_1900790	Uncharacterized protein. (809 aa)
	SCP_1900780	Uncharacterized protein. (133 aa)
	SCP_0906340	Uncharacterized protein. (836 aa)
	SCP_0906330	Uncharacterized protein. (133 aa)
	SCP_1003540	Uncharacterized protein. (2117 aa)
	SCP_1101270	Nucleoporin seh1; Belongs to the WD repeat SEC13 family. (424 aa)
	SCP_1400230	Nup96 domain-containing protein. (877 aa)
	SCP_1900760	Uncharacterized protein. (102 aa)
	SCP_1502250	Uncharacterized protein. (536 aa)
	SCP_0102730	Uncharacterized protein. (158 aa)
	SCP_0406400	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family. (213 aa)
	SCP_0410650	Uncharacterized protein. (209 aa)
	SCP_0804680	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (842 aa)
	SCP_0900180	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (726 aa)
	SCP_0805770	Ubiquitin-like protein pmt3/smt3. (101 aa)
	SCP_0102750	Uncharacterized protein. (790 aa)
	SCP_0109120	Nucleoporin. (1357 aa)
	SCP_0115780	Nuclear pore protein. (861 aa)
	SCP_0102740	Uncharacterized protein. (133 aa)
	SCP_0508890	ELYS domain-containing protein. (776 aa)
	SCP_0206840	Uncharacterized protein. (837 aa)
	SCP_0206830	Uncharacterized protein. (1268 aa)
	SCP_0211500	Protein pim1. (569 aa)
	SCP_0213080	Nucleoporin2-domain-containing protein. (1016 aa)
	SCP_0214860	Uncharacterized protein. (2050 aa)
	SCP_0300880	Uncharacterized protein. (1014 aa)
	SCP_0303090	Protein pim1. (445 aa)
	SCP_0403120	Uncharacterized protein. (1194 aa)
	SCP_0805890	Uncharacterized protein. (1113 aa)
	SCP_0803890	Ubiquitin-like protein. (95 aa)
	SCP_0700190	Uncharacterized protein. (210 aa)
	SCP_0601940	Uncharacterized protein. (688 aa)

Your Current Organism:

Sparassis crispa

NCBI taxonomy Id: 139825
Other names: S. crispa

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SCP_0102730	SCP_0109120	A0A401GX09	A0A401G780	Uncharacterized protein.	Nucleoporin.	0.875
SCP_0102730	SCP_0115780	A0A401GX09	A0A401G952	Uncharacterized protein.	Nuclear pore protein.	0.785
SCP_0102730	SCP_0206830	A0A401GX09	A0A401GBH6	Uncharacterized protein.	Uncharacterized protein.	0.731
SCP_0102730	SCP_0206840	A0A401GX09	A0A401GBE2	Uncharacterized protein.	Uncharacterized protein.	0.658
SCP_0102730	SCP_0213080	A0A401GX09	A0A401GD84	Uncharacterized protein.	Nucleoporin2-domain-containing protein.	0.731
SCP_0102730	SCP_0214860	A0A401GX09	A0A401GDL2	Uncharacterized protein.	Uncharacterized protein.	0.826
SCP_0102730	SCP_0403120	A0A401GX09	A0A401GIF0	Uncharacterized protein.	Uncharacterized protein.	0.889
SCP_0102730	SCP_0410650	A0A401GX09	A0A401GKJ7	Uncharacterized protein.	Uncharacterized protein.	0.658
SCP_0102730	SCP_0501100	A0A401GX09	A0A401GMT8	Uncharacterized protein.	Ran GTPase-activating protein.	0.563
SCP_0102730	SCP_0508890	A0A401GX09	A0A401GNQ6	Uncharacterized protein.	ELYS domain-containing protein.	0.850
SCP_0102730	SCP_0601940	A0A401GX09	A0A401GPS3	Uncharacterized protein.	Uncharacterized protein.	0.733
SCP_0102730	SCP_0700190	A0A401GX09	A0A401GRP6	Uncharacterized protein.	Uncharacterized protein.	0.658
SCP_0102730	SCP_0803890	A0A401GX09	A0A401GUF6	Uncharacterized protein.	Ubiquitin-like protein.	0.503
SCP_0102730	SCP_0804680	A0A401GX09	A0A401GW04	Uncharacterized protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.910
SCP_0102730	SCP_0805770	A0A401GX09	A0A401GV39	Uncharacterized protein.	Ubiquitin-like protein pmt3/smt3.	0.503
SCP_0102730	SCP_0805890	A0A401GX09	A0A401GV15	Uncharacterized protein.	Uncharacterized protein.	0.507
SCP_0102730	SCP_0900180	A0A401GX09	A0A401GV81	Uncharacterized protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.882
SCP_0102730	SCP_1003540	A0A401GX09	A0A401GY23	Uncharacterized protein.	Uncharacterized protein.	0.882
SCP_0102730	SCP_1101270	A0A401GX09	A0A401GZ58	Uncharacterized protein.	Nucleoporin seh1; Belongs to the WD repeat SEC13 family.	0.866
SCP_0102730	SCP_1400230	A0A401GX09	A0A401H2I4	Uncharacterized protein.	Nup96 domain-containing protein.	0.731