(66 nodes) MetI-like superfamily network (Sulfitobacter pseudonitzschiae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	gsiD-6	Peptide/nickel transport system permease protein. (273 aa)
	oppC	Peptide/nickel transport system permease protein. (333 aa)
	dppB	Peptide/nickel transport system permease protein. (345 aa)
	ydcV	Spermidine/putrescine transport system permease protein. (266 aa)
	potB	Spermidine/putrescine transport system permease protein. (309 aa)
	gsiD	Peptide/nickel transport system permease protein. (290 aa)
	gsiC	Peptide/nickel transport system permease protein. (308 aa)
	gsiD-2	Peptide/nickel transport system permease protein/oligopeptide transport system permease protein. (287 aa)
	gsiC-2	Peptide/nickel transport system permease protein/glutathione transport system permease protein. (307 aa)
	ydcU	iron(III) transport system permease protein. (572 aa)
	cmpB	NitT/TauT family transport system permease protein. (287 aa)
	ssuC	NitT/TauT family transport system permease protein. (308 aa)
	ugpA	Carbohydrate ABC transporter membrane protein 1, CUT1 family. (319 aa)
	araQ	Carbohydrate ABC transporter membrane protein 2, CUT1 family. (272 aa)
	gsiC-3	Peptide/nickel transport system permease protein. (309 aa)
	oppC-2	Peptide/nickel transport system permease protein. (288 aa)
	dppC	Peptide/nickel transport system permease protein. (384 aa)
	dppB-2	Peptide/nickel transport system permease protein. (341 aa)
	dppC-2	Peptide/nickel transport system permease protein. (307 aa)
	gsiC-4	Peptide/nickel transport system permease protein. (328 aa)
	phnE	Phosphonate transport system permease protein. (264 aa)
	phnE-2	Phosphonate transport system permease protein. (265 aa)
	cmpB-2	Nitrate/nitrite transport system permease protein. (360 aa)
	modB	Molybdate transport system permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. (228 aa)
	glnM	L-glutamine ABC transporter membrane protein. (412 aa)
	yhdY	L-glutamine ABC transporter membrane protein. (432 aa)
	dppC-3	Peptide/nickel transport system permease protein. (279 aa)
	dppB-3	Peptide/nickel transport system permease protein. (325 aa)
	ssuC-2	NitT/TauT family transport system permease protein. (272 aa)
	ddpC	Peptide/nickel transport system permease protein. (270 aa)
	gsiC-5	Peptide/nickel transport system permease protein. (318 aa)
	yejB	Microcin C transport system permease protein. (364 aa)
	yejE	Microcin C transport system permease protein. (388 aa)
	ssuC-3	NitT/TauT family transport system permease protein. (282 aa)
	potH	Putative spermidine/putrescine transport system permease protein. (597 aa)
	gsiC-6	Peptide/nickel transport system permease protein. (315 aa)
	gsiD-3	Peptide/nickel transport system permease protein. (271 aa)
	cysW	Thiamine transport system permease protein. (519 aa)
	ydcV-2	Putative spermidine/putrescine transport system permease protein. (294 aa)
	potB-2	Putative spermidine/putrescine transport system permease protein. (555 aa)
	potH-2	Putrescine transport system permease protein. (291 aa)
	ydcV-3	Putrescine transport system permease protein. (272 aa)
	phnU	iron(III) transport system permease protein. (556 aa)
	sugB	Sorbitol ABC transporter membrane protein. (276 aa)
	sugA	Sorbitol ABC transporter membrane protein. (288 aa)
	hisM	Amino acid ABC transporter membrane protein 2, PAAT family. (268 aa)
	artQ	Amino acid ABC transporter membrane protein 1, PAAT family. (293 aa)
	gsiD-4	Peptide/nickel transport system permease protein. (489 aa)
	gsiC-7	Peptide/nickel transport system permease protein. (348 aa)
	tupB	Tungstate transport system permease protein. (234 aa)
	glnM-2	Amino acid ABC transporter membrane protein, PAAT family. (316 aa)
	dppB-4	Peptide/nickel transport system permease protein. (316 aa)
	gsiD-5	Peptide/nickel transport system permease protein/glutathione transport system permease protein. (299 aa)
	gsiC-8	Peptide/nickel transport system permease protein. (314 aa)
	yxeN	Amino acid ABC transporter membrane protein, PAAT family. (224 aa)
	ssuC-4	Taurine transport system permease protein. (445 aa)
	gsiC-9	Peptide/nickel transport system permease protein. (313 aa)
	ddpC-2	Peptide/nickel transport system permease protein. (295 aa)
	gsiD-7	Peptide/nickel transport system permease protein. (303 aa)
	gsiC-10	Peptide/nickel transport system permease protein. (305 aa)
	ugpA-2	Carbohydrate ABC transporter membrane protein 1, CUT1 family. (289 aa)
	sugB-2	Carbohydrate ABC transporter membrane protein 2, CUT1 family. (287 aa)
	ugpA-3	Carbohydrate ABC transporter membrane protein 1, CUT1 family. (285 aa)
	sugB-3	Carbohydrate ABC transporter membrane protein 2, CUT1 family. (264 aa)
	gsiD-8	Peptide/nickel transport system permease protein. (291 aa)
	gsiC-11	Peptide/nickel transport system permease protein. (322 aa)

Your Current Organism:

Sulfitobacter pseudonitzschiae

NCBI taxonomy Id: 1402135
Other names: DSM 26824, MCCC 1A00686, S. pseudonitzschiae, Sulfitobacter pseudonitzschiae Hong et al. 2015, Sulfitobacter sp. H3, Sulfitobacter sp. MCCC 1A00686, strain H3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
araQ	potB-2	SAMN05444149_102182	SAMN05444149_104297	Carbohydrate ABC transporter membrane protein 2, CUT1 family.	Putative spermidine/putrescine transport system permease protein.	0.623
araQ	sugA	SAMN05444149_102182	SAMN05444149_105159	Carbohydrate ABC transporter membrane protein 2, CUT1 family.	Sorbitol ABC transporter membrane protein.	0.954
araQ	ugpA	SAMN05444149_102182	SAMN05444149_102181	Carbohydrate ABC transporter membrane protein 2, CUT1 family.	Carbohydrate ABC transporter membrane protein 1, CUT1 family.	0.990
araQ	ugpA-2	SAMN05444149_102182	SAMN05444149_11144	Carbohydrate ABC transporter membrane protein 2, CUT1 family.	Carbohydrate ABC transporter membrane protein 1, CUT1 family.	0.838
araQ	ugpA-3	SAMN05444149_102182	SAMN05444149_11150	Carbohydrate ABC transporter membrane protein 2, CUT1 family.	Carbohydrate ABC transporter membrane protein 1, CUT1 family.	0.917
araQ	ydcV-2	SAMN05444149_102182	SAMN05444149_104296	Carbohydrate ABC transporter membrane protein 2, CUT1 family.	Putative spermidine/putrescine transport system permease protein.	0.623
artQ	hisM	SAMN05444149_10539	SAMN05444149_10538	Amino acid ABC transporter membrane protein 1, PAAT family.	Amino acid ABC transporter membrane protein 2, PAAT family.	0.937
artQ	yhdY	SAMN05444149_10539	SAMN05444149_103281	Amino acid ABC transporter membrane protein 1, PAAT family.	L-glutamine ABC transporter membrane protein.	0.529
cmpB	ssuC	SAMN05444149_102150	SAMN05444149_102151	NitT/TauT family transport system permease protein.	NitT/TauT family transport system permease protein.	0.850
cmpB	ssuC-2	SAMN05444149_102150	SAMN05444149_103674	NitT/TauT family transport system permease protein.	NitT/TauT family transport system permease protein.	0.420
ddpC	dppB	SAMN05444149_103730	SAMN05444149_101267	Peptide/nickel transport system permease protein.	Peptide/nickel transport system permease protein.	0.579
ddpC	dppB-2	SAMN05444149_103730	SAMN05444149_102257	Peptide/nickel transport system permease protein.	Peptide/nickel transport system permease protein.	0.554
ddpC	dppB-3	SAMN05444149_103730	SAMN05444149_103347	Peptide/nickel transport system permease protein.	Peptide/nickel transport system permease protein.	0.634
ddpC	dppB-4	SAMN05444149_103730	SAMN05444149_10642	Peptide/nickel transport system permease protein.	Peptide/nickel transport system permease protein.	0.732
ddpC	gsiC	SAMN05444149_103730	SAMN05444149_101821	Peptide/nickel transport system permease protein.	Peptide/nickel transport system permease protein.	0.733
ddpC	gsiC-10	SAMN05444149_103730	SAMN05444149_11127	Peptide/nickel transport system permease protein.	Peptide/nickel transport system permease protein.	0.707
ddpC	gsiC-11	SAMN05444149_103730	SAMN05444149_11620	Peptide/nickel transport system permease protein.	Peptide/nickel transport system permease protein.	0.647
ddpC	gsiC-2	SAMN05444149_103730	SAMN05444149_101831	Peptide/nickel transport system permease protein.	Peptide/nickel transport system permease protein/glutathione transport system permease protein.	0.808
ddpC	gsiC-3	SAMN05444149_103730	SAMN05444149_102196	Peptide/nickel transport system permease protein.	Peptide/nickel transport system permease protein.	0.742
ddpC	gsiC-4	SAMN05444149_103730	SAMN05444149_102523	Peptide/nickel transport system permease protein.	Peptide/nickel transport system permease protein.	0.572

page 1 of 29

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About