(6 nodes) SNARE network (Aspergillus parasiticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	P875_00010288	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (392 aa)
	P875_00010347	Vesicle transport v-SNARE protein N-terminu. (224 aa)
	P875_00117151	SNARE domain protein. (303 aa)
	P875_00127630	Syntaxin-like protein; Belongs to the syntaxin family. (271 aa)
	P875_00108822	SNARE domain protein. (281 aa)
	P875_00109021	SNARE domain protein. (343 aa)

Your Current Organism:

Aspergillus parasiticus

NCBI taxonomy Id: 1403190
Other names: A. parasiticus SU-1, Aspergillus parasiticus SU-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
P875_00010288	P875_00010347	A0A0F0ICG8	A0A0F0IDZ9	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Vesicle transport v-SNARE protein N-terminu.	0.999
P875_00010288	P875_00108822	A0A0F0ICG8	A0A0F0ILA2	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	SNARE domain protein.	0.709
P875_00010288	P875_00109021	A0A0F0ICG8	A0A0F0IPB8	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	SNARE domain protein.	0.603
P875_00010288	P875_00117151	A0A0F0ICG8	A0A0F0IIF1	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	SNARE domain protein.	0.709
P875_00010288	P875_00127630	A0A0F0ICG8	A0A0F0IJT2	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Syntaxin-like protein; Belongs to the syntaxin family.	0.719
P875_00010347	P875_00010288	A0A0F0IDZ9	A0A0F0ICG8	Vesicle transport v-SNARE protein N-terminu.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.999
P875_00010347	P875_00108822	A0A0F0IDZ9	A0A0F0ILA2	Vesicle transport v-SNARE protein N-terminu.	SNARE domain protein.	0.505
P875_00010347	P875_00109021	A0A0F0IDZ9	A0A0F0IPB8	Vesicle transport v-SNARE protein N-terminu.	SNARE domain protein.	0.991
P875_00010347	P875_00117151	A0A0F0IDZ9	A0A0F0IIF1	Vesicle transport v-SNARE protein N-terminu.	SNARE domain protein.	0.505
P875_00010347	P875_00127630	A0A0F0IDZ9	A0A0F0IJT2	Vesicle transport v-SNARE protein N-terminu.	Syntaxin-like protein; Belongs to the syntaxin family.	0.996
P875_00108822	P875_00010288	A0A0F0ILA2	A0A0F0ICG8	SNARE domain protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.709
P875_00108822	P875_00010347	A0A0F0ILA2	A0A0F0IDZ9	SNARE domain protein.	Vesicle transport v-SNARE protein N-terminu.	0.505
P875_00108822	P875_00109021	A0A0F0ILA2	A0A0F0IPB8	SNARE domain protein.	SNARE domain protein.	0.838
P875_00108822	P875_00117151	A0A0F0ILA2	A0A0F0IIF1	SNARE domain protein.	SNARE domain protein.	0.828
P875_00108822	P875_00127630	A0A0F0ILA2	A0A0F0IJT2	SNARE domain protein.	Syntaxin-like protein; Belongs to the syntaxin family.	0.841
P875_00109021	P875_00010288	A0A0F0IPB8	A0A0F0ICG8	SNARE domain protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.603
P875_00109021	P875_00010347	A0A0F0IPB8	A0A0F0IDZ9	SNARE domain protein.	Vesicle transport v-SNARE protein N-terminu.	0.991
P875_00109021	P875_00108822	A0A0F0IPB8	A0A0F0ILA2	SNARE domain protein.	SNARE domain protein.	0.838
P875_00109021	P875_00117151	A0A0F0IPB8	A0A0F0IIF1	SNARE domain protein.	SNARE domain protein.	0.838
P875_00109021	P875_00127630	A0A0F0IPB8	A0A0F0IJT2	SNARE domain protein.	Syntaxin-like protein; Belongs to the syntaxin family.	0.895