(13 nodes) Organelle inner membrane network (Bacillus mycoides)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ptsG	PTS glucose transporter subunit IICBA; Phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology. (687 aa)
	dck	Deoxynucleoside kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)
	dgk	Deoxynucleoside kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (211 aa)
	folK	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (171 aa)
	ARJ19948.1	NAD(P)-dependent alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (302 aa)
	ARJ20187.1	PTS transporter subunit IICB; Phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology. (545 aa)
	nagE	PTS N-acetylglucosamine transporter subunit IIB; Derived by automated computational analysis using gene prediction method: Protein Homology. (502 aa)
	treP	PTS trehalose transporter subunit IIBC; Derived by automated computational analysis using gene prediction method: Protein Homology. (475 aa)
	ARJ20593.1	PTS sugar transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology. (454 aa)
	ARJ21613.1	Amine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (478 aa)
	ARJ21693.1	Amine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (490 aa)
	ARJ22385.1	NADPH:quinone reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)
	ARJ23094.1	NADPH:quinone reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (332 aa)

Your Current Organism:

Bacillus mycoides

NCBI taxonomy Id: 1405
Other names: ATCC 6462, B. mycoides, Bacillus sp. B38V, Bacillus sp. CHR3P1B1, Bacillus sp. JP44SK50, Bacillus sp. JP44SK9, Bacillus sp. TAN 119, Bacillus weihenstephanensis, CCUG 26678, CIP 103472, CIP 105772 [[Bacillus weihenstephanensis]], DSM 11821 [[Bacillus weihenstephanensis]], DSM 2048, LMG 18989 [[Bacillus weihenstephanensis]], LMG 7128, LMG:18989 [[Bacillus weihenstephanensis]], LMG:7128, NBRC 101228, NBRC 101238 [[Bacillus weihenstephanensis]], NCTC 12974, NRRL B-14799, NRRL B-14811, NRRL B-23307 [[Bacillus weihenstephanensis]], NRRL NRS-273, WSBC 10204 [[Bacillus weihenstephanensis]]

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARJ20187.1	ARJ20593.1	B7492_02425	B7492_04815	PTS transporter subunit IICB; Phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS sugar transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.549
ARJ20187.1	nagE	B7492_02425	B7492_02755	PTS transporter subunit IICB; Phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS N-acetylglucosamine transporter subunit IIB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.464
ARJ20187.1	ptsG	B7492_02425	B7492_21500	PTS transporter subunit IICB; Phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS glucose transporter subunit IICBA; Phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.912
ARJ20187.1	treP	B7492_02425	B7492_03495	PTS transporter subunit IICB; Phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS trehalose transporter subunit IIBC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.737
ARJ20593.1	ARJ20187.1	B7492_04815	B7492_02425	PTS sugar transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS transporter subunit IICB; Phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.549
ARJ20593.1	nagE	B7492_04815	B7492_02755	PTS sugar transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS N-acetylglucosamine transporter subunit IIB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.582
ARJ20593.1	ptsG	B7492_04815	B7492_21500	PTS sugar transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS glucose transporter subunit IICBA; Phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.959
ARJ20593.1	treP	B7492_04815	B7492_03495	PTS sugar transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS trehalose transporter subunit IIBC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.446
ARJ21613.1	ARJ21693.1	B7492_10265	B7492_10685	Amine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
ARJ21613.1	ARJ23094.1	B7492_10265	B7492_18770	Amine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADPH:quinone reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.902
ARJ21693.1	ARJ21613.1	B7492_10685	B7492_10265	Amine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
ARJ21693.1	ARJ23094.1	B7492_10685	B7492_18770	Amine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADPH:quinone reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.902
ARJ23094.1	ARJ21613.1	B7492_18770	B7492_10265	NADPH:quinone reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.902
ARJ23094.1	ARJ21693.1	B7492_18770	B7492_10685	NADPH:quinone reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.902
dck	dgk	B7492_00100	B7492_00105	Deoxynucleoside kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deoxynucleoside kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.888
dgk	dck	B7492_00105	B7492_00100	Deoxynucleoside kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deoxynucleoside kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.888
dgk	folK	B7492_00105	B7492_00415	Deoxynucleoside kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.833
folK	dgk	B7492_00415	B7492_00105	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deoxynucleoside kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.833
nagE	ARJ20187.1	B7492_02755	B7492_02425	PTS N-acetylglucosamine transporter subunit IIB; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS transporter subunit IICB; Phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.464
nagE	ARJ20593.1	B7492_02755	B7492_04815	PTS N-acetylglucosamine transporter subunit IIB; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS sugar transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.582

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