(5 nodes) ABC-2 family transporter protein, and OmpR/PhoB-type DNA-binding domain network (Paenibacillus polymyxa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rcaC	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)
	ybdK	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (476 aa)
	bcrA1	Bacitracin ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (305 aa)
	bcrB1	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (238 aa)
	mrsE1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (242 aa)

Your Current Organism:

Paenibacillus polymyxa

NCBI taxonomy Id: 1406
Other names: ATCC 842, Aerobacillus polymyxa, Bacillus polymyxa, Bacillus sp. NCIM 2538, Bacillus sp. NCIM 2540, Bacillus sp. NCIM 2726, Bacillus sp. RP 2.2, CCUG 7426, CFBP 4258, CIP 66.22, Clostridium polymyxa, DSM 36, Granulobacter polymyxa, HAMBI 635, IAM 13419, IFO 15309, JCM 2507, LMG 13294, LMG:13294, NBRC 15309, NCCB 24016, NCIB 8158, NCIB:8158, NCTC 10343, NRRL B-4317, P. polymyxa, Paenibacillus sp. JCM 8035, Paenibacillus sp. JCM 8036, Paenibacillus sp. JCM 8037, Paenibacillus sp. JCM 8038, Paenibacillus sp. JCM 8039, Paenibacillus sp. WLY78, VKM B-514

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
bcrA1	bcrB1	LK13_15205	LK13_15210	Bacitracin ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.937
bcrA1	mrsE1	LK13_15205	LK13_15215	Bacitracin ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950
bcrA1	rcaC	LK13_15205	LK13_15195	Bacitracin ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.705
bcrA1	ybdK	LK13_15205	LK13_15200	Bacitracin ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.848
bcrB1	bcrA1	LK13_15210	LK13_15205	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Bacitracin ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.937
bcrB1	mrsE1	LK13_15210	LK13_15215	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
bcrB1	rcaC	LK13_15210	LK13_15195	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.854
bcrB1	ybdK	LK13_15210	LK13_15200	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.918
mrsE1	bcrA1	LK13_15215	LK13_15205	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Bacitracin ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950
mrsE1	bcrB1	LK13_15215	LK13_15210	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
mrsE1	rcaC	LK13_15215	LK13_15195	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.828
mrsE1	ybdK	LK13_15215	LK13_15200	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
rcaC	bcrA1	LK13_15195	LK13_15205	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Bacitracin ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.705
rcaC	bcrB1	LK13_15195	LK13_15210	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.854
rcaC	mrsE1	LK13_15195	LK13_15215	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.828
rcaC	ybdK	LK13_15195	LK13_15200	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978
ybdK	bcrA1	LK13_15200	LK13_15205	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Bacitracin ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.848
ybdK	bcrB1	LK13_15200	LK13_15210	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.918
ybdK	mrsE1	LK13_15200	LK13_15215	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
ybdK	rcaC	LK13_15200	LK13_15195	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978

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