(23 nodes) ABC transporter transmembrane region network (Paenibacillus polymyxa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cydD1	Cysteine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (577 aa)
	msbA2	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (616 aa)
	msbA1	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (589 aa)
	AIY11390.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (621 aa)
	AIY11389.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (611 aa)
	msbA7	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (585 aa)
	yheH	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (696 aa)
	hetA	Multidrug ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (619 aa)
	AIY10425.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1036 aa)
	yfiC3	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (612 aa)
	yfiB3	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (580 aa)
	yfiB1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (583 aa)
	yfiC1	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (579 aa)
	cydC	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (586 aa)
	cydD3	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (600 aa)
	msbA3	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (557 aa)
	yvcC3	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (605 aa)
	msbA9	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (551 aa)
	yknU	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (591 aa)
	yknV	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (612 aa)
	ywjA	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (571 aa)
	AIY07212.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (612 aa)
	AIY11567.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (573 aa)

Your Current Organism:

Paenibacillus polymyxa

NCBI taxonomy Id: 1406
Other names: ATCC 842, Aerobacillus polymyxa, Bacillus polymyxa, Bacillus sp. NCIM 2538, Bacillus sp. NCIM 2540, Bacillus sp. NCIM 2726, Bacillus sp. RP 2.2, CCUG 7426, CFBP 4258, CIP 66.22, Clostridium polymyxa, DSM 36, Granulobacter polymyxa, HAMBI 635, IAM 13419, IFO 15309, JCM 2507, LMG 13294, LMG:13294, NBRC 15309, NCCB 24016, NCIB 8158, NCIB:8158, NCTC 10343, NRRL B-4317, P. polymyxa, Paenibacillus sp. JCM 8035, Paenibacillus sp. JCM 8036, Paenibacillus sp. JCM 8037, Paenibacillus sp. JCM 8038, Paenibacillus sp. JCM 8039, Paenibacillus sp. WLY78, VKM B-514

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIY07212.1	AIY11567.1	LK13_00915	LK13_00910	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.841
AIY11389.1	AIY11390.1	LK13_23750	LK13_23755	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861
AIY11389.1	msbA3	LK13_23750	LK13_06810	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.571
AIY11390.1	AIY11389.1	LK13_23755	LK13_23750	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861
AIY11390.1	msbA3	LK13_23755	LK13_06810	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.665
AIY11567.1	AIY07212.1	LK13_00910	LK13_00915	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.841
cydC	cydD3	LK13_08765	LK13_08760	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
cydD1	cydD3	LK13_06035	LK13_08760	Cysteine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.847
cydD1	msbA9	LK13_06035	LK13_06030	Cysteine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.873
cydD3	cydC	LK13_08760	LK13_08765	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
cydD3	cydD1	LK13_08760	LK13_06035	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cysteine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.847
hetA	msbA3	LK13_18990	LK13_06810	Multidrug ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.560
msbA1	msbA2	LK13_24610	LK13_24615	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.843
msbA1	msbA3	LK13_24610	LK13_06810	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.496
msbA2	msbA1	LK13_24615	LK13_24610	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.843
msbA2	msbA3	LK13_24615	LK13_06810	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.501
msbA3	AIY11389.1	LK13_06810	LK13_23750	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.571
msbA3	AIY11390.1	LK13_06810	LK13_23755	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.665
msbA3	hetA	LK13_06810	LK13_18990	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.560
msbA3	msbA1	LK13_06810	LK13_24610	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.496

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