(5 nodes) RNA phosphodiester bond hydrolysis, endonucleolytic, and TRAM domain network (Acinetobacter sp. TGLY2)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AMW79856.1	Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
	AMW79857.1	Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (652 aa)
	miaB	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. (485 aa)
	AMW79859.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (362 aa)
	ybeY	rRNA maturation RNase YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (161 aa)

Your Current Organism:

Acinetobacter sp. TGLY2

NCBI taxonomy Id: 1407071
Other names: A. sp. TGL-Y2, Acinetobacter sp. TGL-Y2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMW79856.1	AMW79857.1	AMD27_13780	AMD27_13785	Derived by automated computational analysis using gene prediction method: Protein Homology.	Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.874
AMW79856.1	AMW79859.1	AMD27_13780	AMD27_13795	Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.630
AMW79856.1	miaB	AMD27_13780	AMD27_13790	Derived by automated computational analysis using gene prediction method: Protein Homology.	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.	0.652
AMW79856.1	ybeY	AMD27_13780	AMD27_13800	Derived by automated computational analysis using gene prediction method: Protein Homology.	rRNA maturation RNase YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	0.646
AMW79857.1	AMW79856.1	AMD27_13785	AMD27_13780	Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.874
AMW79857.1	AMW79859.1	AMD27_13785	AMD27_13795	Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.650
AMW79857.1	miaB	AMD27_13785	AMD27_13790	Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.	0.678
AMW79857.1	ybeY	AMD27_13785	AMD27_13800	Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	rRNA maturation RNase YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	0.683
AMW79859.1	AMW79856.1	AMD27_13795	AMD27_13780	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.630
AMW79859.1	AMW79857.1	AMD27_13795	AMD27_13785	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.650
AMW79859.1	miaB	AMD27_13795	AMD27_13790	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.	0.816
AMW79859.1	ybeY	AMD27_13795	AMD27_13800	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	rRNA maturation RNase YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	0.987
miaB	AMW79856.1	AMD27_13790	AMD27_13780	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.652
miaB	AMW79857.1	AMD27_13790	AMD27_13785	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.	Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.678
miaB	AMW79859.1	AMD27_13790	AMD27_13795	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.816
miaB	ybeY	AMD27_13790	AMD27_13800	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.	rRNA maturation RNase YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	0.823
ybeY	AMW79856.1	AMD27_13800	AMD27_13780	rRNA maturation RNase YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.646
ybeY	AMW79857.1	AMD27_13800	AMD27_13785	rRNA maturation RNase YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.683
ybeY	AMW79859.1	AMD27_13800	AMD27_13795	rRNA maturation RNase YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.987
ybeY	miaB	AMD27_13800	AMD27_13790	rRNA maturation RNase YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.	0.823