Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AMW79113.1 | csrA | AMD27_09570 | AMD27_10310 | Integration host factor subunit beta; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | Carbon storage regulator; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). | 0.493 |
| AMW79113.1 | ihfA | AMD27_09570 | AMD27_02785 | Integration host factor subunit beta; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | Integration host factor subunit alpha; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.987 |
| AMW79143.1 | AMW79144.1 | AMD27_09725 | AMD27_09730 | tRNA threonylcarbamoyladenosine biosynthesis protein TsaE; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.569 |
| AMW79143.1 | AMW79145.1 | AMD27_09725 | AMD27_09735 | tRNA threonylcarbamoyladenosine biosynthesis protein TsaE; Derived by automated computational analysis using gene prediction method: Protein Homology. | Pseudouridylate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.777 |
| AMW79143.1 | AMW79146.1 | AMD27_09725 | AMD27_09740 | tRNA threonylcarbamoyladenosine biosynthesis protein TsaE; Derived by automated computational analysis using gene prediction method: Protein Homology. | XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.682 |
| AMW79143.1 | AMW79147.1 | AMD27_09725 | AMD27_09745 | tRNA threonylcarbamoyladenosine biosynthesis protein TsaE; Derived by automated computational analysis using gene prediction method: Protein Homology. | Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.652 |
| AMW79143.1 | hfq | AMD27_09725 | AMD27_09710 | tRNA threonylcarbamoyladenosine biosynthesis protein TsaE; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA-binding protein hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.571 |
| AMW79143.1 | miaA | AMD27_09725 | AMD27_09715 | tRNA threonylcarbamoyladenosine biosynthesis protein TsaE; Derived by automated computational analysis using gene prediction method: Protein Homology. | tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.922 |
| AMW79144.1 | AMW79143.1 | AMD27_09730 | AMD27_09725 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | tRNA threonylcarbamoyladenosine biosynthesis protein TsaE; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.569 |
| AMW79144.1 | AMW79145.1 | AMD27_09730 | AMD27_09735 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Pseudouridylate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.773 |
| AMW79144.1 | AMW79146.1 | AMD27_09730 | AMD27_09740 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.517 |
| AMW79144.1 | hfq | AMD27_09730 | AMD27_09710 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | RNA-binding protein hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.410 |
| AMW79144.1 | miaA | AMD27_09730 | AMD27_09715 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.569 |
| AMW79145.1 | AMW79143.1 | AMD27_09735 | AMD27_09725 | Pseudouridylate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. | tRNA threonylcarbamoyladenosine biosynthesis protein TsaE; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.777 |
| AMW79145.1 | AMW79144.1 | AMD27_09735 | AMD27_09730 | Pseudouridylate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.773 |
| AMW79145.1 | AMW79146.1 | AMD27_09735 | AMD27_09740 | Pseudouridylate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. | XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.746 |
| AMW79145.1 | AMW79147.1 | AMD27_09735 | AMD27_09745 | Pseudouridylate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.715 |
| AMW79145.1 | hfq | AMD27_09735 | AMD27_09710 | Pseudouridylate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA-binding protein hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.510 |
| AMW79145.1 | miaA | AMD27_09735 | AMD27_09715 | Pseudouridylate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. | tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.796 |
| AMW79146.1 | AMW79143.1 | AMD27_09740 | AMD27_09725 | XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | tRNA threonylcarbamoyladenosine biosynthesis protein TsaE; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.682 |
page 1 of 3