(7 nodes) TonB-dependent receptor-like network (Acinetobacter sp. TGLY2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AMW79692.1	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (618 aa)
	AMW78122.1	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (730 aa)
	AMW77844.1	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (769 aa)
	AMW77575.1	TonB-dependent copper receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (712 aa)
	AMW79710.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (705 aa)
	AMW78155.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (674 aa)
	AMW78140.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (717 aa)

Your Current Organism:

Acinetobacter sp. TGLY2

NCBI taxonomy Id: 1407071
Other names: A. sp. TGL-Y2, Acinetobacter sp. TGL-Y2

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMW77844.1	AMW78155.1	AMD27_02350	AMD27_04110	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.530
AMW77844.1	AMW79710.1	AMD27_02350	AMD27_12950	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.549
AMW78140.1	AMW78155.1	AMD27_04020	AMD27_04110	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.734
AMW78140.1	AMW79692.1	AMD27_04020	AMD27_12850	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.497
AMW78140.1	AMW79710.1	AMD27_04020	AMD27_12950	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.479
AMW78155.1	AMW77844.1	AMD27_04110	AMD27_02350	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.530
AMW78155.1	AMW78140.1	AMD27_04110	AMD27_04020	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.734
AMW78155.1	AMW79692.1	AMD27_04110	AMD27_12850	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
AMW79692.1	AMW78140.1	AMD27_12850	AMD27_04020	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.497
AMW79692.1	AMW78155.1	AMD27_12850	AMD27_04110	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
AMW79710.1	AMW77844.1	AMD27_12950	AMD27_02350	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.549
AMW79710.1	AMW78140.1	AMD27_12950	AMD27_04020	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.479