(16 nodes) Mixed, incl. Peptide transport, and ABC transporter type 1, GsiC-like, N-terminal domain network (Halobacterium hubeiense)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	dppDF1	ABC-type transport system ATP-binding protein (probable substrate dipeptide/oligopeptide). (909 aa)
	dppA1	ABC-type transport system periplasmic substrate-binding protein (probable substrate dipeptide/oligopeptide). (545 aa)
	dppB1	ABC-type transport system permease protein (probable substrate dipeptide/oligopeptide). (337 aa)
	dppC1	ABC-type transport system permease protein (probable substrate dipeptide/oligopeptide). (305 aa)
	dppA2	ABC-type transport system periplasmic substrate-binding protein (probable substrate dipeptide/oligopeptide). (545 aa)
	dppB2	ABC-type transport system permease protein (probable substrate dipeptide/oligopeptide). (334 aa)
	dppC2	ABC-type transport system permease protein (probable substrate dipeptide/oligopeptide). (337 aa)
	dppD2	ABC-type transport system ATP-binding protein (probable substrate dipeptide/oligopeptide). (390 aa)
	dppF2	ABC-type transport system ATP-binding protein (probable substrate dipeptide/oligopeptide). (403 aa)
	dppA3	Product: uncharacterized protein (nonfunctional); gene truncated at the N- and C-terminus. (601 aa)
	dppB3	ABC-type transport system permease protein (probable substrate dipeptide/oligopeptide). (338 aa)
	dppC3	ABC-type transport system permease protein (probable substrate dipeptide/oligopeptide). (492 aa)
	dppD3	ABC-type transport system ATP-binding protein (probable substrate dipeptide/oligopeptide). (363 aa)
	dppF3	ABC-type transport system ATP-binding protein (probable substrate dipeptide/oligopeptide). (441 aa)
	HHUB_3529	Uncharacterized protein. (141 aa)
	HHUB_3530	Uncharacterized protein. (174 aa)

Your Current Organism:

Halobacterium hubeiense

NCBI taxonomy Id: 1407499
Other names: H. hubeiense, HAMBI 3616, Halobacterium sp. JI20-1, strain JI20-1

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HHUB_3529	HHUB_3530	HHUB_3529	HHUB_3530	Uncharacterized protein.	Uncharacterized protein.	0.684
HHUB_3529	dppA3	HHUB_3529	HHUB_3524	Uncharacterized protein.	Product: uncharacterized protein (nonfunctional); gene truncated at the N- and C-terminus.	0.573
HHUB_3529	dppB3	HHUB_3529	HHUB_3525	Uncharacterized protein.	ABC-type transport system permease protein (probable substrate dipeptide/oligopeptide).	0.809
HHUB_3529	dppC3	HHUB_3529	HHUB_3526	Uncharacterized protein.	ABC-type transport system permease protein (probable substrate dipeptide/oligopeptide).	0.802
HHUB_3529	dppD3	HHUB_3529	HHUB_3527	Uncharacterized protein.	ABC-type transport system ATP-binding protein (probable substrate dipeptide/oligopeptide).	0.827
HHUB_3529	dppF3	HHUB_3529	HHUB_3528	Uncharacterized protein.	ABC-type transport system ATP-binding protein (probable substrate dipeptide/oligopeptide).	0.860
HHUB_3530	HHUB_3529	HHUB_3530	HHUB_3529	Uncharacterized protein.	Uncharacterized protein.	0.684
HHUB_3530	dppA3	HHUB_3530	HHUB_3524	Uncharacterized protein.	Product: uncharacterized protein (nonfunctional); gene truncated at the N- and C-terminus.	0.453
HHUB_3530	dppB3	HHUB_3530	HHUB_3525	Uncharacterized protein.	ABC-type transport system permease protein (probable substrate dipeptide/oligopeptide).	0.684
HHUB_3530	dppC3	HHUB_3530	HHUB_3526	Uncharacterized protein.	ABC-type transport system permease protein (probable substrate dipeptide/oligopeptide).	0.684
HHUB_3530	dppD3	HHUB_3530	HHUB_3527	Uncharacterized protein.	ABC-type transport system ATP-binding protein (probable substrate dipeptide/oligopeptide).	0.665
HHUB_3530	dppF3	HHUB_3530	HHUB_3528	Uncharacterized protein.	ABC-type transport system ATP-binding protein (probable substrate dipeptide/oligopeptide).	0.676
dppA1	dppA2	HHUB_1059	HHUB_1304	ABC-type transport system periplasmic substrate-binding protein (probable substrate dipeptide/oligopeptide).	ABC-type transport system periplasmic substrate-binding protein (probable substrate dipeptide/oligopeptide).	0.486
dppA1	dppA3	HHUB_1059	HHUB_3524	ABC-type transport system periplasmic substrate-binding protein (probable substrate dipeptide/oligopeptide).	Product: uncharacterized protein (nonfunctional); gene truncated at the N- and C-terminus.	0.764
dppA1	dppB1	HHUB_1059	HHUB_1060	ABC-type transport system periplasmic substrate-binding protein (probable substrate dipeptide/oligopeptide).	ABC-type transport system permease protein (probable substrate dipeptide/oligopeptide).	0.983
dppA1	dppB2	HHUB_1059	HHUB_1305	ABC-type transport system periplasmic substrate-binding protein (probable substrate dipeptide/oligopeptide).	ABC-type transport system permease protein (probable substrate dipeptide/oligopeptide).	0.844
dppA1	dppB3	HHUB_1059	HHUB_3525	ABC-type transport system periplasmic substrate-binding protein (probable substrate dipeptide/oligopeptide).	ABC-type transport system permease protein (probable substrate dipeptide/oligopeptide).	0.850
dppA1	dppC1	HHUB_1059	HHUB_1061	ABC-type transport system periplasmic substrate-binding protein (probable substrate dipeptide/oligopeptide).	ABC-type transport system permease protein (probable substrate dipeptide/oligopeptide).	0.997
dppA1	dppC2	HHUB_1059	HHUB_1306	ABC-type transport system periplasmic substrate-binding protein (probable substrate dipeptide/oligopeptide).	ABC-type transport system permease protein (probable substrate dipeptide/oligopeptide).	0.795
dppA1	dppC3	HHUB_1059	HHUB_3526	ABC-type transport system periplasmic substrate-binding protein (probable substrate dipeptide/oligopeptide).	ABC-type transport system permease protein (probable substrate dipeptide/oligopeptide).	0.910