50 items (Rasamsonia emersonii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T310_10135	Aminotransferase. (560 aa)
	T310_10001	Aldehyde dehydrogenase (NAD(+)); Belongs to the aldehyde dehydrogenase family. (471 aa)
	T310_10212	HET domain-containing protein. (782 aa)
	T310_9338	Tryptophan synthase. (727 aa)
	T310_8504	Uncharacterized protein. (237 aa)
	T310_8402	Chorismate mutase. (265 aa)
	T310_8280	Thiamine pyrophosphate enzyme; Belongs to the TPP enzyme family. (567 aa)
	T310_8070	L-serine dehydratase. (462 aa)
	T310_7664	C6 transcription factor. (606 aa)
	T310_7811	Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine. (461 aa)
	T310_7940	Uncharacterized protein. (219 aa)
	T310_7464	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. (434 aa)
	T310_7531	Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities. (772 aa)
	T310_7338	Fungal specific transcription factor domain-containing protein. (661 aa)
	T310_7188	Uncharacterized protein. (334 aa)
	T310_7162	L-PSP endoribonuclease family protein (Brt1). (128 aa)
	T310_6765	C6 finger domain protein. (753 aa)
	T310_6605	Uncharacterized protein. (612 aa)
	T310_6595	Aromatic-amino-acid transaminase. (534 aa)
	T310_6917	Dihydroxy-acid dehydratase. (636 aa)
	T310_6596	Thiamine pyrophosphate enzyme; Belongs to the TPP enzyme family. (537 aa)
	T310_6218	Alpha-acetolactate decarboxylase. (262 aa)
	T310_5083	N-terminal binuclear Zn cluster-containing/DNA binding domain-containing protein. (606 aa)
	T310_5133	Dihydroxy-acid dehydratase. (600 aa)
	T310_4843	DNA excision repair protein Rad16. (988 aa)
	T310_4905	Acetolactate synthase. (802 aa)
	T310_4457	Chorismate synthase. (411 aa)
	T310_4438	3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate. (342 aa)
	T310_4214	Branched-chain amino acid aminotransferase. (981 aa)
	T310_4089	5-proFAR isomerase His6; Belongs to the HisA/HisF family. (99 aa)
	T310_4278	Anthranilate phosphoribosyltransferase. (433 aa)
	T310_3862	Uncharacterized protein. (433 aa)
	T310_3828	ATP phosphoribosyltransferase. (286 aa)
	T310_3705	Acetyl-CoA--deacetylcephalosporin C acetyltransferase. (439 aa)
	T310_3620	Imidazole glycerol phosphate synthase hisHF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The glutaminase domain produces the ammonia necessary for the cyclase domain to produce IGP and AICAR from PRFAR. The ammonia is channeled to the active site of the cyclase domain. Belongs to the HisA/HisF family. (533 aa)
	T310_3352	Threonine dehydratase. (566 aa)
	T310_3752	Para-aminobenzoate synthase PabaA. (978 aa)
	T310_2684	Threonine ammonia-lyase. (388 aa)
	T310_2856	Uncharacterized protein. (307 aa)
	T310_2927	Anthranilate synthase. (528 aa)
	T310_1926	Dihydroxy-acid dehydratase. (658 aa)
	T310_1768	Histidine biosynthesis trifunctional protein. (870 aa)
	T310_1438	Imidazoleglycerol-phosphate dehydratase. (246 aa)
	T310_2057	Acetolactate synthase. (336 aa)
	T310_1730	Histidinol-phosphate transaminase. (430 aa)
	T310_1367	Phosphoglycerate mutase family protein. (200 aa)
	T310_1048	DNA repair protein Rad26. (748 aa)
	T310_0491	L-serine ammonia-lyase. (403 aa)
	T310_0604	Prephenate dehydrogenase. (518 aa)
	T310_0650	Uncharacterized protein. (157 aa)

Your Current Organism:

Rasamsonia emersonii

NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T310_0491	T310_0650	A0A0F4Z4M3	A0A0F4Z637	L-serine ammonia-lyase.	Uncharacterized protein.	0.681
T310_0491	T310_10001	A0A0F4Z4M3	A0A0F4YDY4	L-serine ammonia-lyase.	Aldehyde dehydrogenase (NAD(+)); Belongs to the aldehyde dehydrogenase family.	0.527
T310_0491	T310_10212	A0A0F4Z4M3	A0A0F4YF13	L-serine ammonia-lyase.	HET domain-containing protein.	0.484
T310_0491	T310_1730	A0A0F4Z4M3	A0A0F4Z286	L-serine ammonia-lyase.	Histidinol-phosphate transaminase.	0.448
T310_0491	T310_1768	A0A0F4Z4M3	A0A0F4Z157	L-serine ammonia-lyase.	Histidine biosynthesis trifunctional protein.	0.487
T310_0491	T310_1926	A0A0F4Z4M3	A0A0F4Z0Z5	L-serine ammonia-lyase.	Dihydroxy-acid dehydratase.	0.554
T310_0491	T310_2057	A0A0F4Z4M3	A0A0F4Z212	L-serine ammonia-lyase.	Acetolactate synthase.	0.937
T310_0491	T310_2684	A0A0F4Z4M3	A0A0F4YYE3	L-serine ammonia-lyase.	Threonine ammonia-lyase.	0.870
T310_0491	T310_3352	A0A0F4Z4M3	A0A0F4YWY3	L-serine ammonia-lyase.	Threonine dehydratase.	0.850
T310_0491	T310_3705	A0A0F4Z4M3	A0A0F4YW05	L-serine ammonia-lyase.	Acetyl-CoA--deacetylcephalosporin C acetyltransferase.	0.738
T310_0491	T310_4214	A0A0F4Z4M3	A0A0F4YUJ5	L-serine ammonia-lyase.	Branched-chain amino acid aminotransferase.	0.894
T310_0491	T310_4905	A0A0F4Z4M3	A0A0F4YT76	L-serine ammonia-lyase.	Acetolactate synthase.	0.891
T310_0491	T310_5083	A0A0F4Z4M3	A0A0F4YRL8	L-serine ammonia-lyase.	N-terminal binuclear Zn cluster-containing/DNA binding domain-containing protein.	0.696
T310_0491	T310_5133	A0A0F4Z4M3	A0A0F4YRZ0	L-serine ammonia-lyase.	Dihydroxy-acid dehydratase.	0.554
T310_0491	T310_6596	A0A0F4Z4M3	A0A0F4YMU3	L-serine ammonia-lyase.	Thiamine pyrophosphate enzyme; Belongs to the TPP enzyme family.	0.738
T310_0491	T310_6765	A0A0F4Z4M3	A0A0F4YLX1	L-serine ammonia-lyase.	C6 finger domain protein.	0.527
T310_0491	T310_6917	A0A0F4Z4M3	A0A0F4YMS5	L-serine ammonia-lyase.	Dihydroxy-acid dehydratase.	0.554
T310_0491	T310_7162	A0A0F4Z4M3	A0A0F4YKW9	L-serine ammonia-lyase.	L-PSP endoribonuclease family protein (Brt1).	0.696
T310_0491	T310_7188	A0A0F4Z4M3	A0A0F4YKV4	L-serine ammonia-lyase.	Uncharacterized protein.	0.719
T310_0491	T310_7338	A0A0F4Z4M3	A0A0F4YK98	L-serine ammonia-lyase.	Fungal specific transcription factor domain-containing protein.	0.685