STRINGSTRING
T310_9941 T310_9941 T310_9814 T310_9814 T310_9812 T310_9812 T310_9817 T310_9817 T310_9842 T310_9842 T310_9710 T310_9710 T310_8406 T310_8406 T310_8285 T310_8285 T310_8417 T310_8417 T310_7571 T310_7571 T310_7618 T310_7618 T310_7374 T310_7374 T310_7291 T310_7291 T310_7282 T310_7282 T310_7391 T310_7391 T310_6931 T310_6931 T310_7044 T310_7044 T310_7054 T310_7054 T310_6966 T310_6966 T310_6932 T310_6932 T310_7159 T310_7159 T310_6757 T310_6757 T310_7146 T310_7146 T310_6654 T310_6654 T310_6731 T310_6731 T310_6397 T310_6397 T310_6734 T310_6734 T310_6527 T310_6527 T310_5877 T310_5877 T310_5187 T310_5187 T310_5800 T310_5800 T310_4968 T310_4968 T310_4880 T310_4880 T310_5542 T310_5542 T310_4900 T310_4900 T310_5471 T310_5471 T310_5434 T310_5434 T310_4931 T310_4931 T310_4728 T310_4728 T310_4833 T310_4833 T310_4848 T310_4848 T310_4617 T310_4617 T310_5161 T310_5161 T310_4504 T310_4504 T310_4403 T310_4403 T310_4605 T310_4605 T310_4556 T310_4556 T310_4687 T310_4687 T310_4130 T310_4130 T310_4493 T310_4493 T310_4136 T310_4136 T310_3913 T310_3913 T310_2948 T310_2948 T310_2967 T310_2967 T310_2870 T310_2870 T310_2687 T310_2687 T310_2692 T310_2692 T310_3121 T310_3121 T310_2531 T310_2531 T310_2781 T310_2781 T310_2073 T310_2073 T310_2017 T310_2017 T310_1771 T310_1771 T310_1667 T310_1667 T310_1779 T310_1779 T310_2128 T310_2128 T310_1440 T310_1440 T310_1720 T310_1720 T310_1339 T310_1339 T310_1785 T310_1785 T310_1552 T310_1552 T310_1490 T310_1490 T310_0874 T310_0874 T310_1165 T310_1165 T310_0977 T310_0977 T310_1072 T310_1072 T310_0923 T310_0923 T310_0230 T310_0230 T310_0116 T310_0116 T310_0596 T310_0596
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
T310_9941Uncharacterized protein. (448 aa)
T310_9814TAFII28 domain-containing protein. (405 aa)
T310_9812Transcription initiation factor TFIID complex 60 kDa subunit. (445 aa)
T310_9817Acyl_transf_3 domain-containing protein. (475 aa)
T310_9842TFIIH complex helicase Ssl2. (830 aa)
T310_9710Transcription initiation factor TFIID subunit 7. (489 aa)
T310_8406Transcription elongation factor S-II. (296 aa)
T310_8285Cyclin; Belongs to the cyclin family. (1186 aa)
T310_8417Transcription elongation factor SPT6. (1250 aa)
T310_7571RNA polymerase II transcription factor protein. (1002 aa)
T310_7618RNA polymerase II transcription elongation factor (Ctr9). (1218 aa)
T310_7374Transcription factor RfeG. (277 aa)
T310_7291Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (124 aa)
T310_7282Uncharacterized protein. (813 aa)
T310_7391Uncharacterized protein. (247 aa)
T310_6931Uncharacterized protein. (541 aa)
T310_7044DNA directed RNA polymerase II 15 kDa subunit. (132 aa)
T310_7054Transcription factor TFIIE complex alpha subunit. (412 aa)
T310_6966Transcription initiation protein spt5. (884 aa)
T310_6932DNA-directed RNA polymerase. (217 aa)
T310_7159SPT6_acidic domain-containing protein. (284 aa)
T310_6757Transcriptional elongation factor Iws1. (431 aa)
T310_7146Acyl_transf_3 domain-containing protein. (426 aa)
T310_6654F-box domain-containing protein. (335 aa)
T310_6731Transcription initiation protein. (260 aa)
T310_6397Uncharacterized protein. (205 aa)
T310_6734Transcription initiation protein. (183 aa)
T310_6527RNA polymerase II transcription elongation factor Rtf1p. (623 aa)
T310_5877Protein kinase domain-containing protein. (592 aa)
T310_5187DNA-directed RNA polymerase. (339 aa)
T310_5800DNA repair helicase. (754 aa)
T310_4968Uncharacterized protein. (562 aa)
T310_4880Uncharacterized protein. (272 aa)
T310_5542DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1241 aa)
T310_4900Transcription initiation factor IIF. (720 aa)
T310_5471Cyclin. (441 aa)
T310_5434Uncharacterized protein. (163 aa)
T310_4931Allergen Asp f 4. (303 aa)
T310_4728RTR1-type domain-containing protein. (463 aa)
T310_4833Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (403 aa)
T310_4848DNA-directed RNA polymerase. (133 aa)
T310_4617Transcription elongation complex subunit (Cdc68). (1020 aa)
T310_5161DNA-directed RNA polymerase. (824 aa)
T310_4504Transcription factor TFIIH subunit Tfb4. (455 aa)
T310_4403Histone acetyltransferase. (1104 aa)
T310_4605General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (462 aa)
T310_4556Cyclin Ccl1. (436 aa)
T310_4687RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (837 aa)
T310_4130Cyclin-dependent kinase. (544 aa)
T310_4493TFIID and and SAGA complex TAF10 subunit. (326 aa)
T310_4136Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (107 aa)
T310_3913RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (433 aa)
T310_2948Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (294 aa)
T310_2967G protein-coupled receptor GprD. (434 aa)
T310_2870Uncharacterized protein. (459 aa)
T310_2687Bromodomain associated domain protein. (358 aa)
T310_2692NIF domain protein. (577 aa)
T310_3121Uncharacterized protein. (348 aa)
T310_2531Uncharacterized protein. (481 aa)
T310_2781Uncharacterized protein. (1269 aa)
T310_2073Uncharacterized protein. (283 aa)
T310_2017Complex: TFIID is composed of TBP. (462 aa)
T310_1771Transcription initiation factor TFIID, 31kD subunit. (292 aa)
T310_1667NAD dependent epimerase/dehydratase. (274 aa)
T310_1779DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1743 aa)
T310_2128Transcription initiation factor iif, beta subunit. (403 aa)
T310_1440Nitroreductase domain-containing protein. (269 aa)
T310_1720Uncharacterized protein. (287 aa)
T310_1339WD_REPEATS_REGION domain-containing protein. (788 aa)
T310_1785Transcription factor TFIIA complex subunit Toa1. (491 aa)
T310_1552Uncharacterized protein. (604 aa)
T310_1490RNA polymerase II accessory factor Cdc73p. (484 aa)
T310_0874HMG box protein. (309 aa)
T310_1165Transcription initiation factor TFIID subunit 12. (614 aa)
T310_0977FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...] (640 aa)
T310_1072DUF4211 domain-containing protein. (643 aa)
T310_0923DNA-directed RNA polymerase. (160 aa)
T310_0230RNA helicase. (861 aa)
T310_0116Transcription initiation protein spt5. (127 aa)
T310_0596Uncharacterized protein. (610 aa)
Your Current Organism:
Rasamsonia emersonii
NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64
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