33 items (Rasamsonia emersonii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T310_8406	Transcription elongation factor S-II. (296 aa)
	T310_8285	Cyclin; Belongs to the cyclin family. (1186 aa)
	T310_8417	Transcription elongation factor SPT6. (1250 aa)
	T310_7618	RNA polymerase II transcription elongation factor (Ctr9). (1218 aa)
	T310_7374	Transcription factor RfeG. (277 aa)
	T310_7291	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (124 aa)
	T310_6931	Uncharacterized protein. (541 aa)
	T310_7044	DNA directed RNA polymerase II 15 kDa subunit. (132 aa)
	T310_6966	Transcription initiation protein spt5. (884 aa)
	T310_6932	DNA-directed RNA polymerase. (217 aa)
	T310_7159	SPT6_acidic domain-containing protein. (284 aa)
	T310_6757	Transcriptional elongation factor Iws1. (431 aa)
	T310_6527	RNA polymerase II transcription elongation factor Rtf1p. (623 aa)
	T310_5877	Protein kinase domain-containing protein. (592 aa)
	T310_5187	DNA-directed RNA polymerase. (339 aa)
	T310_5542	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1241 aa)
	T310_5471	Cyclin. (441 aa)
	T310_4931	Allergen Asp f 4. (303 aa)
	T310_4728	RTR1-type domain-containing protein. (463 aa)
	T310_4848	DNA-directed RNA polymerase. (133 aa)
	T310_4617	Transcription elongation complex subunit (Cdc68). (1020 aa)
	T310_4687	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (837 aa)
	T310_4130	Cyclin-dependent kinase. (544 aa)
	T310_4136	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (107 aa)
	T310_2967	G protein-coupled receptor GprD. (434 aa)
	T310_2531	Uncharacterized protein. (481 aa)
	T310_1779	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1743 aa)
	T310_1552	Uncharacterized protein. (604 aa)
	T310_1490	RNA polymerase II accessory factor Cdc73p. (484 aa)
	T310_0977	FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...] (640 aa)
	T310_0923	DNA-directed RNA polymerase. (160 aa)
	T310_0116	Transcription initiation protein spt5. (127 aa)
	T310_0596	Uncharacterized protein. (610 aa)

Your Current Organism:

Rasamsonia emersonii

NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T310_0116	T310_0596	A0A0F4Z5N8	A0A0F4Z654	Transcription initiation protein spt5.	Uncharacterized protein.	0.899
T310_0116	T310_0923	A0A0F4Z5N8	A0A0F4Z590	Transcription initiation protein spt5.	DNA-directed RNA polymerase.	0.965
T310_0116	T310_0977	A0A0F4Z5N8	A0A0F4Z4H3	Transcription initiation protein spt5.	FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...]	0.962
T310_0116	T310_1490	A0A0F4Z5N8	A0A0F4Z2Z1	Transcription initiation protein spt5.	RNA polymerase II accessory factor Cdc73p.	0.912
T310_0116	T310_1552	A0A0F4Z5N8	A0A0F4Z2W1	Transcription initiation protein spt5.	Uncharacterized protein.	0.757
T310_0116	T310_1779	A0A0F4Z5N8	A0A0F4Z1L3	Transcription initiation protein spt5.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.972
T310_0116	T310_2531	A0A0F4Z5N8	A0A0F4YZC8	Transcription initiation protein spt5.	Uncharacterized protein.	0.891
T310_0116	T310_2967	A0A0F4Z5N8	A0A0F4YY18	Transcription initiation protein spt5.	G protein-coupled receptor GprD.	0.684
T310_0116	T310_4130	A0A0F4Z5N8	A0A0F4YU97	Transcription initiation protein spt5.	Cyclin-dependent kinase.	0.917
T310_0116	T310_4136	A0A0F4Z5N8	A0A0F4YW63	Transcription initiation protein spt5.	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	0.839
T310_0116	T310_4617	A0A0F4Z5N8	A0A0F4YSU8	Transcription initiation protein spt5.	Transcription elongation complex subunit (Cdc68).	0.967
T310_0116	T310_4687	A0A0F4Z5N8	A0A0F4YTZ5	Transcription initiation protein spt5.	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	0.817
T310_0116	T310_4728	A0A0F4Z5N8	A0A0F4YSH3	Transcription initiation protein spt5.	RTR1-type domain-containing protein.	0.640
T310_0116	T310_4848	A0A0F4Z5N8	A0A0F4YSS3	Transcription initiation protein spt5.	DNA-directed RNA polymerase.	0.960
T310_0116	T310_4931	A0A0F4Z5N8	A0A0F4YSD7	Transcription initiation protein spt5.	Allergen Asp f 4.	0.684
T310_0116	T310_5187	A0A0F4Z5N8	A0A0F4YR68	Transcription initiation protein spt5.	DNA-directed RNA polymerase.	0.970
T310_0116	T310_5471	A0A0F4Z5N8	A0A0F4YS76	Transcription initiation protein spt5.	Cyclin.	0.769
T310_0116	T310_5542	A0A0F4Z5N8	A0A0F4YS24	Transcription initiation protein spt5.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.975
T310_0116	T310_5877	A0A0F4Z5N8	A0A0F4YPC0	Transcription initiation protein spt5.	Protein kinase domain-containing protein.	0.861
T310_0116	T310_6527	A0A0F4Z5N8	A0A0F4YNP6	Transcription initiation protein spt5.	RNA polymerase II transcription elongation factor Rtf1p.	0.914