STRINGSTRING
T310_9486 T310_9486 T310_9541 T310_9541 T310_9543 T310_9543 T310_9467 T310_9467 T310_9618 T310_9618 T310_8524 T310_8524 T310_8122 T310_8122 T310_8075 T310_8075 T310_8193 T310_8193 T310_7109 T310_7109 T310_6859 T310_6859 T310_6788 T310_6788 T310_6649 T310_6649 T310_6855 T310_6855 T310_6091 T310_6091 T310_6065 T310_6065 T310_5237 T310_5237 T310_5611 T310_5611 T310_5109 T310_5109 T310_5179 T310_5179 T310_5275 T310_5275 T310_5236 T310_5236 T310_3965 T310_3965 T310_4002 T310_4002 T310_3616 T310_3616 T310_3329 T310_3329 T310_3241 T310_3241 T310_3226 T310_3226 T310_3196 T310_3196 T310_3071 T310_3071 T310_2685 T310_2685 T310_2679 T310_2679 T310_2371 T310_2371 T310_2308 T310_2308 T310_2055 T310_2055 T310_1942 T310_1942 T310_1529 T310_1529 T310_1181 T310_1181 FEN1 FEN1 T310_1527 T310_1527 T310_0896 T310_0896 T310_0956 T310_0956 T310_0541 T310_0541 T310_0304 T310_0304 T310_0275 T310_0275 T310_0380 T310_0380 T310_0105 T310_0105 T310_0586 T310_0586
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
T310_9486DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily. (344 aa)
T310_9541DNA replication factor C subunit Rfc5. (307 aa)
T310_9543Replication factor C subunit 1. (1056 aa)
T310_9467Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (594 aa)
T310_9618SAE2 domain-containing protein. (733 aa)
T310_8524Uncharacterized protein. (270 aa)
T310_8122RAD52 DNA repair protein RADC. (606 aa)
T310_8075DNA-directed DNA polymerase. (546 aa)
T310_8193Uncharacterized protein. (258 aa)
T310_7109DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (646 aa)
T310_6859DNA primase; Belongs to the eukaryotic-type primase small subunit family. (511 aa)
T310_6788Uncharacterized protein. (446 aa)
T310_6649Putative replication factor-a protein. (291 aa)
T310_6855Exodeoxyribonuclease I. (752 aa)
T310_6091BRCT domain protein. (831 aa)
T310_6065Activator 1 37 kDa subunit. (352 aa)
T310_5237DNA repair protein Rad1. (412 aa)
T310_5611DNA replication factor C subunit Rfc3. (385 aa)
T310_5109Meiotic recombination protein DLH1; Belongs to the RecA family. (279 aa)
T310_5179DNA replication helicase Dna2. (1671 aa)
T310_5275DNA damage repair protein (Rad9). (1454 aa)
T310_5236DNA repair protein Rad50. (1270 aa)
T310_3965Non-specific serine/threonine protein kinase; Belongs to the PI3/PI4-kinase family. (2388 aa)
T310_4002DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2303 aa)
T310_3616DNA-directed DNA polymerase. (801 aa)
T310_3329Sister chromatid cohesion factor (Chl12). (1053 aa)
T310_3241AAA domain-containing protein. (1265 aa)
T310_3226DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (669 aa)
T310_3196Serine/threonine-protein kinase Tel1; Serine/threonine protein kinase which activates checkpoint signaling upon genotoxic stresses such as ionizing radiation (IR), ultraviolet light (UV), or DNA replication stalling, thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]- Q. Phosphorylates histone H2A to form H2AS128ph (gamma-H2A) at sites of DNA damage, involved in the regulation of DNA damage response mechanism. Required for the control of telomere length and genome stability; Belongs to the PI3/PI4-kinase family. ATM subfamily. (2886 aa)
T310_3071Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (791 aa)
T310_2685Uncharacterized protein. (441 aa)
T310_2679DNA repair protein (Rad57). (527 aa)
T310_2371Rad2-like endonuclease. (1116 aa)
T310_2308RecQ family helicase MusN. (1607 aa)
T310_2055ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (512 aa)
T310_1942DNA polymerase. (1105 aa)
T310_1529DNA polymerase. (1428 aa)
T310_1181Uncharacterized protein. (938 aa)
FEN1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (432 aa)
T310_1527DNA repair protein rad9; Acts in DNA repair and mutagenesis. Involved in promoting resistance to ionizing radiation and UV light, as well as regulating cell cycle progression after irradiation. (452 aa)
T310_0896Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (1062 aa)
T310_0956DNA primase large subunit; DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication; Belongs to the eukaryotic-type primase large subunit family. (501 aa)
T310_05413'-5' exonuclease/helicase (Wrn). (1044 aa)
T310_0304Uncharacterized protein. (386 aa)
T310_0275Uncharacterized protein. (897 aa)
T310_0380AAA domain-containing protein. (729 aa)
T310_0105RECA_2 domain-containing protein. (414 aa)
T310_0586Cell cycle checkpoint protein (Hus1). (436 aa)
Your Current Organism:
Rasamsonia emersonii
NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64
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