STRINGSTRING
T310_10027 T310_10027 T310_9803 T310_9803 T310_10065 T310_10065 T310_9798 T310_9798 T310_9468 T310_9468 T310_9483 T310_9483 T310_9572 T310_9572 T310_9989 T310_9989 T310_9999 T310_9999 T310_9635 T310_9635 T310_9346 T310_9346 T310_9357 T310_9357 T310_9276 T310_9276 T310_9099 T310_9099 T310_8909 T310_8909 T310_9550 T310_9550 T310_8596 T310_8596 T310_8516 T310_8516 T310_9250 T310_9250 T310_8306 T310_8306 T310_9098 T310_9098 T310_8169 T310_8169 T310_8483 T310_8483 T310_7966 T310_7966 T310_8113 T310_8113 T310_7891 T310_7891 T310_7930 T310_7930 T310_7810 T310_7810 T310_7792 T310_7792 T310_8399 T310_8399 T310_7732 T310_7732 T310_7533 T310_7533 T310_7890 T310_7890 T310_7895 T310_7895 T310_7859 T310_7859 T310_7555 T310_7555 T310_7507 T310_7507 T310_7312 T310_7312 T310_7330 T310_7330 T310_7286 T310_7286 T310_7341 T310_7341 T310_7556 T310_7556 T310_7089 T310_7089 T310_7287 T310_7287 T310_7016 T310_7016 T310_7406 T310_7406 T310_7185 T310_7185 T310_6749 T310_6749 T310_6783 T310_6783 T310_6696 T310_6696 T310_6578 T310_6578 T310_6784 T310_6784 T310_6535 T310_6535 T310_6601 T310_6601 T310_6419 T310_6419 T310_6484 T310_6484 T310_6648 T310_6648 T310_6098 T310_6098 T310_6074 T310_6074 T310_6655 T310_6655 T310_6080 T310_6080 T310_6153 T310_6153 T310_5424 T310_5424 T310_6001 T310_6001 T310_5334 T310_5334 T310_5247 T310_5247 T310_5886 T310_5886 T310_5177 T310_5177 T310_5389 T310_5389 T310_5154 T310_5154 T310_5338 T310_5338 T310_5273 T310_5273 T310_4631 T310_4631 YTM1 YTM1 T310_4808 T310_4808 T310_4638 T310_4638 T310_5213 T310_5213 T310_5183 T310_5183 T310_4530 T310_4530 T310_4892 T310_4892 T310_4939 T310_4939 T310_4311 T310_4311 T310_4894 T310_4894 T310_4635 T310_4635 T310_4153 T310_4153 T310_4046 T310_4046 T310_4412 T310_4412 T310_4088 T310_4088 TIF6 TIF6 T310_3859 T310_3859 T310_3732 T310_3732 T310_3593 T310_3593 T310_3503 T310_3503 T310_3677 T310_3677 T310_4047 T310_4047 T310_3731 T310_3731 T310_3321 T310_3321 T310_3238 T310_3238 T310_3327 T310_3327 T310_3459 T310_3459 T310_2901 T310_2901 T310_3527 T310_3527 T310_3277 T310_3277 T310_2745 T310_2745 T310_2816 T310_2816 NOP7 NOP7 T310_3297 T310_3297 T310_2748 T310_2748 T310_3119 T310_3119 T310_2423 T310_2423 T310_2842 T310_2842 T310_2442 T310_2442 T310_2691 T310_2691 T310_2372 T310_2372 T310_2382 T310_2382 T310_2786 T310_2786 ERB1 ERB1 T310_2534 T310_2534 T310_1954 T310_1954 T310_1804 T310_1804 T310_1936 T310_1936 T310_2136 T310_2136 SPB1 SPB1 T310_2065 T310_2065 T310_1609 T310_1609 T310_1769 T310_1769 T310_1420 T310_1420 T310_1560 T310_1560 T310_2020 T310_2020 T310_1745 T310_1745 T310_1699 T310_1699 T310_1209 T310_1209 T310_1800 T310_1800 T310_1747 T310_1747 T310_1447 T310_1447 T310_0892 T310_0892 T310_1583 T310_1583 T310_1544 T310_1544 NAT10 NAT10 T310_1180 T310_1180 T310_0687 T310_0687 T310_0649 T310_0649 T310_0284 T310_0284 T310_0361 T310_0361 T310_0299 T310_0299 T310_0270 T310_0270 T310_0212 T310_0212 T310_0205 T310_0205 T310_0349 T310_0349 T310_0579 T310_0579 T310_0057 T310_0057 T310_0087 T310_0087 T310_0755 T310_0755 T310_0547 T310_0547 T310_0036 T310_0036 T310_0418 T310_0418
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
T310_10027Notchless-like WD40 repeat-containing protein. (515 aa)
T310_9803rRNA processing protein. (302 aa)
T310_10065Sialidase domain-containing protein. (348 aa)
T310_9798Periodic tryptophan protein. (231 aa)
T310_9468RNA helicase; Belongs to the DEAD box helicase family. (501 aa)
T310_9483PUM-HD domain-containing protein. (715 aa)
T310_9572Pre-rRNA processing protein Rrp12. (1275 aa)
T310_9989Sas10 domain-containing protein. (676 aa)
T310_9999Exosomal 3'-5' exoribonuclease complex. (465 aa)
T310_9635Protein pxr1. (294 aa)
T310_9346Pre-rRNA processing protein Esf1. (726 aa)
T310_9357Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (441 aa)
T310_9276Ribosomal assembly complex component Ipi3. (614 aa)
T310_9099Uncharacterized protein. (101 aa)
T310_8909F-box domain protein. (365 aa)
T310_9550Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (4906 aa)
T310_8596Cell wall biogenesis protein phosphatase Ssd1. (914 aa)
T310_8516Uncharacterized protein. (233 aa)
T310_9250Exosome-associated protein. (277 aa)
T310_8306ATP dependent RNA helicase. (1168 aa)
T310_909860S ribosome biogenesis protein Brx1. (132 aa)
T310_8169Small nucleolar ribonucleoprotein complex component (Utp5). (863 aa)
T310_8483DEAH box polypeptide 36. (283 aa)
T310_7966Uncharacterized protein. (391 aa)
T310_8113RNA binding protein. (305 aa)
T310_7891Ribosome biogenesis protein Ssf2. (363 aa)
T310_7930Ribosome biogenesis protein RLP24. (191 aa)
T310_7810rRNA processing protein Pwp1. (554 aa)
T310_7792Fibrillarin. (683 aa)
T310_8399Non-specific serine/threonine protein kinase. (549 aa)
T310_7732Dual specificity phosphatase. (450 aa)
T310_7533U3 small nucleolar ribonucleoprotein IMP4. (411 aa)
T310_7890ATP-dependent rRNA helicase rrp3; Belongs to the DEAD box helicase family. (472 aa)
T310_7895Small nucleolar ribonucleoprotein complex subunit. (449 aa)
T310_7859Uncharacterized protein. (275 aa)
T310_7555Ribosome biogenesis protein. (335 aa)
T310_7507RNA processing factor 1. (436 aa)
T310_73123' exoribonuclease family protein. (408 aa)
T310_7330DEAH-box RNA helicase (Dhr1). (1233 aa)
T310_7286Small nucleolar ribonucleoprotein complex subunit. (514 aa)
T310_7341Small nucleolar ribonucleoprotein complex subunit Utp15. (542 aa)
T310_7556WD_REPEATS_REGION domain-containing protein. (1429 aa)
T310_7089ToxD protein. (541 aa)
T310_7287Pre-rRNA processing protein Tsr1. (811 aa)
T310_7016Sec2p domain-containing protein. (307 aa)
T310_7406rRNA processing protein (Ebp2). (396 aa)
T310_7185zf-LYAR domain-containing protein. (617 aa)
T310_6749WD domain protein. (910 aa)
T310_6783Uncharacterized protein. (331 aa)
T310_6696Small nucleolar ribonucleoprotein complex subunit Utp14. (981 aa)
T310_6578RNA helicase; Belongs to the DEAD box helicase family. (603 aa)
T310_678460S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family. (528 aa)
T310_6535Nuclear protein (Sgd1). (853 aa)
T310_6601Ribosome biogenesis protein (Bms1). (1841 aa)
T310_6419WD repeat protein. (716 aa)
T310_6484tRNA and rRNA cytosine-C5-methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (786 aa)
T310_6648ATP-dependent RNA helicase DBP10. (910 aa)
T310_6098RNA helicase. (652 aa)
T310_60743'-5' exoribonuclease. (265 aa)
T310_6655RNA helicase. (833 aa)
T310_6080Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (236 aa)
T310_6153U3 small nucleolar ribonucleoprotein Mpp10. (813 aa)
T310_5424RNA-binding protein required for biogenesis of the ribosomal 60S subunit. (139 aa)
T310_6001U3 small nucleolar RNA-associated protein 10. (1818 aa)
T310_5334Pre-rRNA-processing protein PNO1. (260 aa)
T310_5247Nucleolar protein 12. (560 aa)
T310_5886Small nucleolar ribonucleoprotein complex subunit (Pwp2). (908 aa)
T310_5177Exosome complex exonuclease exoribonuclease (Rrp44); Belongs to the RNR ribonuclease family. (1029 aa)
T310_5389Ribosomal small subunit assembly protein. (326 aa)
T310_5154RIO1 family protein kinase. (657 aa)
T310_5338Carboxyl methylase. (279 aa)
T310_527320S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family. (428 aa)
T310_4631WD_REPEATS_REGION domain-containing protein. (637 aa)
YTM1Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (444 aa)
T310_4808Exosome complex endonuclease 2/ribosomal RNA processing protein. (138 aa)
T310_463860S ribosome biogenesis protein Mak11. (485 aa)
T310_5213Nop14-like family protein. (922 aa)
T310_5183RNase_PH domain-containing protein. (394 aa)
T310_4530RNA 3'-terminal phosphate cyclase. (578 aa)
T310_4892DUF652 domain-containing protein. (207 aa)
T310_4939Exosome complex endonuclease 1. (254 aa)
T310_4311Small nucleolar ribonucleoprotein complex subunit. (1006 aa)
T310_4894WD repeat protein. (1047 aa)
T310_4635Small nucleolar ribonucleoprotein complex subunit. (1013 aa)
T310_4153Uncharacterized protein. (321 aa)
T310_4046Low-temperature viability protein ltv1. (516 aa)
T310_4412RNA helicase; Belongs to the DEAD box helicase family. (750 aa)
T310_4088Uncharacterized protein. (397 aa)
TIF6Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family. (224 aa)
T310_3859Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (226 aa)
T310_3732Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family. (690 aa)
T310_3593Small nucleolar ribonucleoprotein complex subunit. (634 aa)
T310_3503Ribosomal RNA processing protein. (325 aa)
T310_3677WD repeat protein. (1010 aa)
T310_4047Ribosome biogenesis GTPase Lsg1. (688 aa)
T310_373160S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (190 aa)
T310_3321Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (126 aa)
T310_3238WD_REPEATS_REGION domain-containing protein. (491 aa)
T310_3327Uncharacterized protein. (411 aa)
T310_3459Exosomal 3'-5' exoribonuclease complex. (384 aa)
T310_2901C2H2-type domain-containing protein. (114 aa)
T310_3527CCAAT-box-binding transcription factor. (1152 aa)
T310_3277Uncharacterized protein. (396 aa)
T310_2745RNA helicase. (770 aa)
T310_2816C2H2 finger domain protein. (493 aa)
NOP7Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (691 aa)
T310_3297RNA helicase. (615 aa)
T310_2748Ribosome assembly protein Noc2. (763 aa)
T310_3119Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (398 aa)
T310_2423Casein kinase I. (390 aa)
T310_2842HEAT repeat protein (DRIM). (2636 aa)
T310_2442Protein SIK1. (866 aa)
T310_2691rRNA biogenesis protein rrp36. (351 aa)
T310_2372RNA helicase. (643 aa)
T310_2382Nucleolar protein 58. (610 aa)
T310_2786RNA-3'-phosphate cyclase family protein. (455 aa)
ERB1Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (796 aa)
T310_2534Uncharacterized protein. (400 aa)
T310_1954GTP binding protein. (562 aa)
T310_1804Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family. (779 aa)
T310_1936Methionyl aminopeptidase. (450 aa)
T310_2136Ribosome biogenesis protein Noc4. (497 aa)
SPB1AdoMet-dependent rRNA methyltransferase SPB1; Histone methyltransferase that specifically methylates histone H3 to form H3K79me. This methylation is required for telomere silencing and for the pachytene checkpoint during the meiotic cell cycle by allowing the recruitment of RAD9 to double strand breaks. Nucleosomes are preferred as substrate compared to free histones. Belongs to the class I-like SAM-binding methyltransferase superfamily. DOT1 family. (1445 aa)
T310_2065ATP dependent RNA helicase (Dob1). (1079 aa)
T310_1609Von Willebrand domain-containing protein. (926 aa)
T310_1769U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (292 aa)
T310_1420rRNA processing protein Ipi1. (342 aa)
T310_1560Uncharacterized protein. (366 aa)
T310_2020U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (715 aa)
T310_1745Methyltransferase (Ncl1); Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (1179 aa)
T310_1699Uncharacterized protein. (583 aa)
T310_120960S ribosome biogenesis protein Rrp14. (544 aa)
T310_1800RNA helicase. (843 aa)
T310_1747DEAD box RNA helicase HelA; Belongs to the DEAD box helicase family. (661 aa)
T310_1447Uncharacterized protein. (213 aa)
T310_0892Pre-rRNA processing protein Mrd1. (973 aa)
T310_158360S ribosomal subunit biogenesis protein Nop16. (246 aa)
T310_1544Serine/threonine-protein kinase RIO1. (192 aa)
NAT10RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1212 aa)
T310_1180RNA processing protein Emg1. (307 aa)
T310_0687Uncharacterized protein; Belongs to the DEAD box helicase family. (1159 aa)
T310_0649rRNA processing protein Bystin. (516 aa)
T310_0284DEAD/DEAH box helicase. (1356 aa)
T310_0361Ribosome biogenesis (Nop4). (764 aa)
T310_0299RNase_PH domain-containing protein. (393 aa)
T310_0270rRNA-processing protein; Involved in nucleolar integrity and required for processing of the pre-rRNA for the 60S ribosome subunit. Belongs to the CGR1 family. (106 aa)
T310_0212U3 small nucleolar RNA-associated protein 22. (1129 aa)
T310_0205Uncharacterized protein. (631 aa)
T310_0349Ribosomal biogenesis protein Gar2. (444 aa)
T310_0579Protein MAK16; Belongs to the MAK16 family. (335 aa)
T310_0057KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (373 aa)
T310_0087Nucleolar GTP-binding protein 1. (1073 aa)
T310_0755ATP-dependent RNA helicase (Hrh1). (805 aa)
T310_0547Uncharacterized protein. (221 aa)
T310_0036Uncharacterized protein. (280 aa)
T310_0418Ribosome biogenesis protein NSA2. (258 aa)
Your Current Organism:
Rasamsonia emersonii
NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64
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