STRINGSTRING
T310_10017 T310_10017 T310_9750 T310_9750 T310_9629 T310_9629 T310_9511 T310_9511 T310_9356 T310_9356 T310_9510 T310_9510 T310_9257 T310_9257 T310_9292 T310_9292 T310_8858 T310_8858 T310_9305 T310_9305 T310_8263 T310_8263 T310_8130 T310_8130 T310_8244 T310_8244 T310_7879 T310_7879 T310_7844 T310_7844 T310_8367 T310_8367 T310_7675 T310_7675 T310_7468 T310_7468 T310_8015 T310_8015 T310_7296 T310_7296 T310_7314 T310_7314 T310_7884 T310_7884 T310_7078 T310_7078 T310_6773 T310_6773 T310_7329 T310_7329 T310_6555 T310_6555 T310_6511 T310_6511 T310_6886 T310_6886 T310_7082 T310_7082 T310_6863 T310_6863 T310_6096 T310_6096 T310_6077 T310_6077 T310_6079 T310_6079 T310_6089 T310_6089 T310_6165 T310_6165 T310_5607 T310_5607 T310_5802 T310_5802 T310_5541 T310_5541 T310_5889 T310_5889 T310_5397 T310_5397 T310_5756 T310_5756 T310_5326 T310_5326 T310_5197 T310_5197 T310_5437 T310_5437 T310_5112 T310_5112 T310_5096 T310_5096 T310_4807 T310_4807 T310_4636 T310_4636 T310_4675 T310_4675 T310_4633 T310_4633 T310_4418 T310_4418 T310_4208 T310_4208 T310_4299 T310_4299 T310_4557 T310_4557 T310_4261 T310_4261 T310_4508 T310_4508 T310_4288 T310_4288 T310_4180 T310_4180 T310_3632 T310_3632 T310_3664 T310_3664 T310_3911 T310_3911 T310_4121 T310_4121 T310_3111 T310_3111 T310_3604 T310_3604 T310_3532 T310_3532 T310_2825 T310_2825 T310_3203 T310_3203 T310_2876 T310_2876 T310_3200 T310_3200 T310_2925 T310_2925 T310_2355 T310_2355 T310_2564 T310_2564 T310_2791 T310_2791 T310_2453 T310_2453 T310_1894 T310_1894 T310_2027 T310_2027 T310_1962 T310_1962 T310_2185 T310_2185 T310_2015 T310_2015 T310_1314 T310_1314 T310_1727 T310_1727 T310_0965 T310_0965 T310_1069 T310_1069 LSM8 LSM8 T310_0668 T310_0668 T310_0695 T310_0695 T310_0572 T310_0572 T310_1223 T310_1223 LSM5 LSM5 T310_1059 T310_1059 T310_0093 T310_0093
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
T310_10017DUF866 domain protein. (160 aa)
T310_9750Uncharacterized protein. (369 aa)
T310_9629Splicing factor 3b, subunit 2. (558 aa)
T310_9511Cell cycle control protein (Cwf4). (775 aa)
T310_9356Cell division control protein (Cdc5). (791 aa)
T310_9510Pre-mRNA splicing factor (Prp31). (523 aa)
T310_9257Pre-mRNA splicing factor. (686 aa)
T310_9292Cir_N domain-containing protein. (697 aa)
T310_8858MI domain-containing protein. (790 aa)
T310_9305mRNA splicing protein. (472 aa)
T310_8263mRNA splicing factor RNA helicase (Prp16). (920 aa)
T310_8130Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (120 aa)
T310_8244RNA helicase-like splicing factor (HRH1). (1139 aa)
T310_7879mRNA splicing factor (Prp18). (389 aa)
T310_7844MPN domain-containing protein. (2332 aa)
T310_8367mRNA splicing factor (Prp17). (582 aa)
T310_7675Pre-mRNA splicing factor. (1311 aa)
T310_7468Nuclear mRNA splicing factor. (1209 aa)
T310_8015U5 snRNP component Snu114. (988 aa)
T310_7296Cell cycle control protein (Cwf2). (426 aa)
T310_7314Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (160 aa)
T310_7884U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
T310_7078Cell cycle control protein (Cwf19). (699 aa)
T310_6773Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (186 aa)
T310_7329RNA binding protein. (226 aa)
T310_6555DNA binding protein SART-1. (729 aa)
T310_6511Uncharacterized protein. (1317 aa)
T310_6886Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family. (165 aa)
T310_7082Splicing factor 3a subunit 2. (235 aa)
T310_6863F-box domain protein. (628 aa)
T310_6096U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (348 aa)
T310_6077Cell cycle control protein (Cwf8). (476 aa)
T310_6079U1 small nuclear ribonucleoprotein 70 kDa. (387 aa)
T310_6089NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX. (1380 aa)
T310_6165RNA binding protein. (302 aa)
T310_5607Peptidylprolyl isomerase. (576 aa)
T310_5802U4/U6 small nuclear ribonucleoprotein. (585 aa)
T310_5541Uncharacterized protein. (276 aa)
T310_5889Transcriptional regulator Cwf13/SkiP. (589 aa)
T310_5397U5 snRNP complex subunit. (358 aa)
T310_5756Splicing factor 3b subunit 4. (347 aa)
T310_5326U1 small nuclear ribonucleoprotein A. (197 aa)
T310_5197Peptidyl prolyl cis-trans isomerase Cyclophilin. (153 aa)
T310_5437mRNA splicing protein Yju2. (272 aa)
T310_5112Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (577 aa)
T310_5096mRNA splicing factor RNA helicase (Cdc28). (1211 aa)
T310_4807Uncharacterized protein. (253 aa)
T310_4636G-patch domain protein (Spp2). (557 aa)
T310_4675FHA domain protein SNIP1. (334 aa)
T310_4633Ubiquitin thiolesterase. (645 aa)
T310_4418Uncharacterized protein. (579 aa)
T310_4208Peptidylprolyl isomerase. (604 aa)
T310_4299Sm domain-containing protein. (230 aa)
T310_4557WD repeat protein. (726 aa)
T310_4261Tuftelin-interacting protein TIP39. (785 aa)
T310_4508Pre-mRNA splicing factor ATP-dependent RNA helicase Prp43. (762 aa)
T310_4288U6 snRNA-associated Sm-like protein LSm6. (136 aa)
T310_4180RNA binding domain protein. (352 aa)
T310_3632Pre-RNA splicing factor Slt11. (371 aa)
T310_3664Uncharacterized protein. (353 aa)
T310_3911Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. (1467 aa)
T310_4121Uncharacterized protein. (176 aa)
T310_3111RNA helicase. (825 aa)
T310_3604mRNA splicing factor (Prp1/Zer1). (980 aa)
T310_3532mRNA splicing protein (Prp5). (451 aa)
T310_2825RNP domain protein. (386 aa)
T310_3203Microfibrillar-associated protein MfaP1. (537 aa)
T310_2876RED_N domain-containing protein. (582 aa)
T310_3200Small nuclear ribonucleoprotein Sm D2. (176 aa)
T310_2925Sde2_N_Ubi domain-containing protein. (1071 aa)
T310_2355Uncharacterized protein. (211 aa)
T310_2564Isy1-like splicing family protein. (254 aa)
T310_2791WD_REPEATS_REGION domain-containing protein. (531 aa)
T310_2453Pre-mRNA-splicing factor cwc24. (343 aa)
T310_1894Peptidyl-prolyl cis-trans isomerase-like 3. (135 aa)
T310_2027Uncharacterized protein. (614 aa)
T310_1962RNA helicase. (1227 aa)
T310_2185Pre-mRNA splicing helicase. (2143 aa)
T310_2015Uncharacterized protein. (205 aa)
T310_1314ATP dependent DNA ligase domain protein. (1667 aa)
T310_1727C2H2 finger domain protein. (291 aa)
T310_0965Splicing factor 3B subunit 1. (1230 aa)
T310_1069Small nuclear ribonucleoprotein Sm D3. (193 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
T310_0668DNA repair and transcription protein (Xab2). (822 aa)
T310_0695Propanediol-phosphate dehydrogenase. (257 aa)
T310_0572SNRNP27 domain-containing protein. (256 aa)
T310_1223BCAS2 family protein. (219 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (201 aa)
T310_1059SYF2 splicing factor domain protein. (400 aa)
T310_0093Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (96 aa)
Your Current Organism:
Rasamsonia emersonii
NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64
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