20 items (Rasamsonia emersonii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T310_9604	mRNA cleavage factor complex component Pcf11. (660 aa)
	T310_8221	Cleavage and polyadenylation specificity factor subunit A. (1414 aa)
	T310_7096	WD repeat protein. (580 aa)
	T310_5913	WD domain, G-beta repeat containing protein. (441 aa)
	T310_6211	Uncharacterized protein. (907 aa)
	T310_5627	Uncharacterized protein. (280 aa)
	T310_6187	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (588 aa)
	T310_5704	mRNA 3'-end-processing protein rna14. (1034 aa)
	T310_5618	R3H domain protein. (617 aa)
	T310_5249	mRNA cleavage and polyadenylation specificity factor complex subunit (Pta1). (795 aa)
	T310_4936	Phosphoprotein phosphatase. (294 aa)
	T310_4312	Serine/threonine-protein phosphatase. (513 aa)
	CLP1	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation. (591 aa)
	T310_3570	Polyadenylation factor subunit CstF64. (249 aa)
	T310_3619	Putative E3 ubiquitin ligase. (639 aa)
	T310_2537	Cleavage and polyadenylation specificity factor subunit 2. (1011 aa)
	T310_2212	DUF455 domain protein. (1233 aa)
	T310_1869	Fip1 domain-containing protein. (341 aa)
	T310_1333	Uncharacterized protein. (268 aa)
	T310_0903	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (309 aa)

Your Current Organism:

Rasamsonia emersonii

NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLP1	T310_1333	A0A0F4YUZ3	A0A0F4Z439	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Uncharacterized protein.	0.972
CLP1	T310_1869	A0A0F4YUZ3	A0A0F4Z0K6	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Fip1 domain-containing protein.	0.942
CLP1	T310_2212	A0A0F4YUZ3	A0A0F4Z086	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	DUF455 domain protein.	0.764
CLP1	T310_2537	A0A0F4YUZ3	A0A0F4Z050	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Cleavage and polyadenylation specificity factor subunit 2.	0.923
CLP1	T310_3570	A0A0F4YUZ3	A0A0F4YVV6	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Polyadenylation factor subunit CstF64.	0.989
CLP1	T310_3619	A0A0F4YUZ3	A0A0F4YXR5	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Putative E3 ubiquitin ligase.	0.443
CLP1	T310_4936	A0A0F4YUZ3	A0A0F4YSE2	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Phosphoprotein phosphatase.	0.574
CLP1	T310_5249	A0A0F4YUZ3	A0A0F4YS99	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	mRNA cleavage and polyadenylation specificity factor complex subunit (Pta1).	0.822
CLP1	T310_5618	A0A0F4YUZ3	A0A0F4YRX1	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	R3H domain protein.	0.867
CLP1	T310_5627	A0A0F4YUZ3	A0A0F4YQ13	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Uncharacterized protein.	0.852
CLP1	T310_5704	A0A0F4YUZ3	A0A0F4YRP3	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	mRNA 3'-end-processing protein rna14.	0.946
CLP1	T310_6187	A0A0F4YUZ3	A0A0F4YQC6	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.764
CLP1	T310_6211	A0A0F4YUZ3	A0A0F4YPM1	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Uncharacterized protein.	0.895
CLP1	T310_7096	A0A0F4YUZ3	A0A0F4YL48	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	WD repeat protein.	0.788
CLP1	T310_8221	A0A0F4YUZ3	A0A0F4YHZ1	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Cleavage and polyadenylation specificity factor subunit A.	0.881
CLP1	T310_9604	A0A0F4YUZ3	A0A0F4YF54	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	mRNA cleavage factor complex component Pcf11.	0.998
T310_0903	T310_1333	A0A0F4Z569	A0A0F4Z439	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	Uncharacterized protein.	0.984
T310_0903	T310_1869	A0A0F4Z569	A0A0F4Z0K6	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	Fip1 domain-containing protein.	0.974
T310_0903	T310_2212	A0A0F4Z569	A0A0F4Z086	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	DUF455 domain protein.	0.879
T310_0903	T310_2537	A0A0F4Z569	A0A0F4Z050	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	Cleavage and polyadenylation specificity factor subunit 2.	0.995