STRINGSTRING
T310_0348 T310_0348 T310_10107 T310_10107 T310_10017 T310_10017 T310_9561 T310_9561 T310_9510 T310_9510 T310_7844 T310_7844 T310_7675 T310_7675 T310_8015 T310_8015 T310_7296 T310_7296 T310_6096 T310_6096 T310_5541 T310_5541 T310_4299 T310_4299 T310_3604 T310_3604 T310_3200 T310_3200 T310_0093 T310_0093 T310_1694 T310_1694 T310_0602 T310_0602
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
T310_0348Uncharacterized protein. (160 aa)
T310_10107WD_REPEATS_REGION domain-containing protein. (324 aa)
T310_10017DUF866 domain protein. (160 aa)
T310_9561Sm domain-containing protein. (765 aa)
T310_9510Pre-mRNA splicing factor (Prp31). (523 aa)
T310_7844MPN domain-containing protein. (2332 aa)
T310_7675Pre-mRNA splicing factor. (1311 aa)
T310_8015U5 snRNP component Snu114. (988 aa)
T310_7296Cell cycle control protein (Cwf2). (426 aa)
T310_6096U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (348 aa)
T310_5541Uncharacterized protein. (276 aa)
T310_4299Sm domain-containing protein. (230 aa)
T310_3604mRNA splicing factor (Prp1/Zer1). (980 aa)
T310_3200Small nuclear ribonucleoprotein Sm D2. (176 aa)
T310_0093Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (96 aa)
T310_1694Tudor domain-containing protein. (302 aa)
T310_0602AAR2 family protein. (480 aa)
Your Current Organism:
Rasamsonia emersonii
NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64
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