STRINGSTRING
T310_10217 T310_10217 T310_10123 T310_10123 T310_9629 T310_9629 T310_9511 T310_9511 T310_9493 T310_9493 T310_9257 T310_9257 T310_9292 T310_9292 T310_8263 T310_8263 T310_8130 T310_8130 T310_8276 T310_8276 T310_7879 T310_7879 T310_8015 T310_8015 T310_7296 T310_7296 T310_7078 T310_7078 T310_6580 T310_6580 T310_6954 T310_6954 T310_7082 T310_7082 T310_6096 T310_6096 T310_6077 T310_6077 T310_6079 T310_6079 T310_5756 T310_5756 T310_5326 T310_5326 T310_5437 T310_5437 T310_4418 T310_4418 T310_4421 T310_4421 T310_4299 T310_4299 T310_4763 T310_4763 T310_4261 T310_4261 T310_4508 T310_4508 T310_3632 T310_3632 T310_3664 T310_3664 T310_3911 T310_3911 T310_3509 T310_3509 T310_2780 T310_2780 T310_3203 T310_3203 T310_3112 T310_3112 T310_3200 T310_3200 T310_2564 T310_2564 T310_2453 T310_2453 T310_1962 T310_1962 T310_2015 T310_2015 T310_1314 T310_1314 T310_0965 T310_0965 T310_0668 T310_0668 T310_1323 T310_1323 T310_0093 T310_0093
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
T310_10217DUF455 domain protein. (398 aa)
T310_10123Uncharacterized protein. (300 aa)
T310_9629Splicing factor 3b, subunit 2. (558 aa)
T310_9511Cell cycle control protein (Cwf4). (775 aa)
T310_9493Uncharacterized protein. (819 aa)
T310_9257Pre-mRNA splicing factor. (686 aa)
T310_9292Cir_N domain-containing protein. (697 aa)
T310_8263mRNA splicing factor RNA helicase (Prp16). (920 aa)
T310_8130Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (120 aa)
T310_8276WD domain, G-beta repeat protein. (1029 aa)
T310_7879mRNA splicing factor (Prp18). (389 aa)
T310_8015U5 snRNP component Snu114. (988 aa)
T310_7296Cell cycle control protein (Cwf2). (426 aa)
T310_7078Cell cycle control protein (Cwf19). (699 aa)
T310_6580Zinc knuckle transcription factor/splicing factor MSL5/ZFM1. (559 aa)
T310_6954PWI domain-containing protein. (568 aa)
T310_7082Splicing factor 3a subunit 2. (235 aa)
T310_6096U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (348 aa)
T310_6077Cell cycle control protein (Cwf8). (476 aa)
T310_6079U1 small nuclear ribonucleoprotein 70 kDa. (387 aa)
T310_5756Splicing factor 3b subunit 4. (347 aa)
T310_5326U1 small nuclear ribonucleoprotein A. (197 aa)
T310_5437mRNA splicing protein Yju2. (272 aa)
T310_4418Uncharacterized protein. (579 aa)
T310_4421U1 snRNP splicing complex subunit (Luc7). (212 aa)
T310_4299Sm domain-containing protein. (230 aa)
T310_4763U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (548 aa)
T310_4261Tuftelin-interacting protein TIP39. (785 aa)
T310_4508Pre-mRNA splicing factor ATP-dependent RNA helicase Prp43. (762 aa)
T310_3632Pre-RNA splicing factor Slt11. (371 aa)
T310_3664Uncharacterized protein. (353 aa)
T310_3911Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. (1467 aa)
T310_3509Nuclear mRNA splicing factor-associated protein. (400 aa)
T310_2780Uncharacterized protein. (431 aa)
T310_3203Microfibrillar-associated protein MfaP1. (537 aa)
T310_3112mRNA splicing protein (Prp39). (646 aa)
T310_3200Small nuclear ribonucleoprotein Sm D2. (176 aa)
T310_2564Isy1-like splicing family protein. (254 aa)
T310_2453Pre-mRNA-splicing factor cwc24. (343 aa)
T310_1962RNA helicase. (1227 aa)
T310_2015Uncharacterized protein. (205 aa)
T310_1314ATP dependent DNA ligase domain protein. (1667 aa)
T310_0965Splicing factor 3B subunit 1. (1230 aa)
T310_0668DNA repair and transcription protein (Xab2). (822 aa)
T310_1323Endo-1,3(4)-beta-glucanase. (382 aa)
T310_0093Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (96 aa)
Your Current Organism:
Rasamsonia emersonii
NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64
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