28 items (Rasamsonia emersonii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T310_4079	DNA-directed RNA polymerase. (498 aa)
	T310_8406	Transcription elongation factor S-II. (296 aa)
	T310_8417	Transcription elongation factor SPT6. (1250 aa)
	T310_7618	RNA polymerase II transcription elongation factor (Ctr9). (1218 aa)
	T310_7323	Uncharacterized protein. (519 aa)
	T310_7044	DNA directed RNA polymerase II 15 kDa subunit. (132 aa)
	T310_7159	SPT6_acidic domain-containing protein. (284 aa)
	T310_6527	RNA polymerase II transcription elongation factor Rtf1p. (623 aa)
	T310_5877	Protein kinase domain-containing protein. (592 aa)
	T310_5721	Uncharacterized protein. (762 aa)
	T310_5374	Uncharacterized protein. (331 aa)
	T310_5379	RNA polymerase II transcription factor SIII (Elongin) subunit A. (411 aa)
	T310_4465	Histone chaperone rtt106. (467 aa)
	T310_4191	HLH DNA binding domain protein. (298 aa)
	T310_4130	Cyclin-dependent kinase. (544 aa)
	T310_4017	THO complex component (Rlr1). (2464 aa)
	T310_3910	THO complex subunit Tho1. (467 aa)
	T310_4136	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (107 aa)
	T310_2858	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1234 aa)
	T310_2531	Uncharacterized protein. (481 aa)
	T310_2758	Zn(2)-C6 fungal-type domain-containing protein. (1092 aa)
	T310_2128	Transcription initiation factor iif, beta subunit. (403 aa)
	T310_1552	Uncharacterized protein. (604 aa)
	T310_1490	RNA polymerase II accessory factor Cdc73p. (484 aa)
	T310_0877	PCI domain-containing protein. (459 aa)
	T310_0923	DNA-directed RNA polymerase. (160 aa)
	T310_0596	Uncharacterized protein. (610 aa)
	T310_0043	Uncharacterized protein. (336 aa)

Your Current Organism:

Rasamsonia emersonii

NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T310_0043	T310_7159	A0A0F4Z7S4	A0A0F4YLY3	Uncharacterized protein.	SPT6_acidic domain-containing protein.	0.458
T310_0043	T310_8417	A0A0F4Z7S4	A0A0F4YJ82	Uncharacterized protein.	Transcription elongation factor SPT6.	0.458
T310_0596	T310_0923	A0A0F4Z654	A0A0F4Z590	Uncharacterized protein.	DNA-directed RNA polymerase.	0.898
T310_0596	T310_1490	A0A0F4Z654	A0A0F4Z2Z1	Uncharacterized protein.	RNA polymerase II accessory factor Cdc73p.	0.998
T310_0596	T310_2128	A0A0F4Z654	A0A0F4Z1V0	Uncharacterized protein.	Transcription initiation factor iif, beta subunit.	0.641
T310_0596	T310_2531	A0A0F4Z654	A0A0F4YZC8	Uncharacterized protein.	Uncharacterized protein.	0.991
T310_0596	T310_2858	A0A0F4Z654	A0A0F4YXX9	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.689
T310_0596	T310_4079	A0A0F4Z654	A0A0F4YUY7	Uncharacterized protein.	DNA-directed RNA polymerase.	0.449
T310_0596	T310_4136	A0A0F4Z654	A0A0F4YW63	Uncharacterized protein.	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	0.638
T310_0596	T310_5379	A0A0F4Z654	A0A0F4YSJ2	Uncharacterized protein.	RNA polymerase II transcription factor SIII (Elongin) subunit A.	0.794
T310_0596	T310_6527	A0A0F4Z654	A0A0F4YNP6	Uncharacterized protein.	RNA polymerase II transcription elongation factor Rtf1p.	0.995
T310_0596	T310_7044	A0A0F4Z654	A0A0F4YLJ5	Uncharacterized protein.	DNA directed RNA polymerase II 15 kDa subunit.	0.898
T310_0596	T310_7159	A0A0F4Z654	A0A0F4YLY3	Uncharacterized protein.	SPT6_acidic domain-containing protein.	0.834
T310_0596	T310_7618	A0A0F4Z654	A0A0F4YJY4	Uncharacterized protein.	RNA polymerase II transcription elongation factor (Ctr9).	0.997
T310_0596	T310_8406	A0A0F4Z654	A0A0F4YHB8	Uncharacterized protein.	Transcription elongation factor S-II.	0.871
T310_0596	T310_8417	A0A0F4Z654	A0A0F4YJ82	Uncharacterized protein.	Transcription elongation factor SPT6.	0.834
T310_0923	T310_0596	A0A0F4Z590	A0A0F4Z654	DNA-directed RNA polymerase.	Uncharacterized protein.	0.898
T310_0923	T310_1490	A0A0F4Z590	A0A0F4Z2Z1	DNA-directed RNA polymerase.	RNA polymerase II accessory factor Cdc73p.	0.915
T310_0923	T310_1552	A0A0F4Z590	A0A0F4Z2W1	DNA-directed RNA polymerase.	Uncharacterized protein.	0.833
T310_0923	T310_2128	A0A0F4Z590	A0A0F4Z1V0	DNA-directed RNA polymerase.	Transcription initiation factor iif, beta subunit.	0.976