STRINGSTRING
T310_9980 T310_9980 T310_10217 T310_10217 T310_10120 T310_10120 T310_10123 T310_10123 T310_10107 T310_10107 T310_10017 T310_10017 T310_9750 T310_9750 T310_9752 T310_9752 T310_9762 T310_9762 T310_9549 T310_9549 T310_9629 T310_9629 T310_9511 T310_9511 T310_9561 T310_9561 T310_9493 T310_9493 T310_9356 T310_9356 T310_9510 T310_9510 T310_9257 T310_9257 T310_9292 T310_9292 T310_8536 T310_8536 T310_8858 T310_8858 T310_9305 T310_9305 T310_8245 T310_8245 T310_8249 T310_8249 T310_8176 T310_8176 T310_8263 T310_8263 T310_7988 T310_7988 T310_8130 T310_8130 T310_8276 T310_8276 T310_8244 T310_8244 T310_7827 T310_7827 T310_7917 T310_7917 T310_7879 T310_7879 T310_7844 T310_7844 T310_8367 T310_8367 T310_7958 T310_7958 T310_7675 T310_7675 T310_7625 T310_7625 T310_7468 T310_7468 T310_8015 T310_8015 T310_7296 T310_7296 T310_7377 T310_7377 T310_7884 T310_7884 T310_7847 T310_7847 T310_7078 T310_7078 T310_7329 T310_7329 T310_6656 T310_6656 T310_6555 T310_6555 T310_6580 T310_6580 T310_6954 T310_6954 T310_6886 T310_6886 T310_7082 T310_7082 T310_6096 T310_6096 T310_6077 T310_6077 T310_6079 T310_6079 T310_6094 T310_6094 T310_6007 T310_6007 T310_6059 T310_6059 T310_6211 T310_6211 T310_6165 T310_6165 T310_5607 T310_5607 T310_5802 T310_5802 T310_5541 T310_5541 T310_5543 T310_5543 T310_5884 T310_5884 T310_5889 T310_5889 T310_5397 T310_5397 T310_5521 T310_5521 T310_5756 T310_5756 T310_5326 T310_5326 T310_5274 T310_5274 T310_5445 T310_5445 T310_5437 T310_5437 T310_5096 T310_5096 T310_4858 T310_4858 T310_4807 T310_4807 T310_4822 T310_4822 T310_4636 T310_4636 T310_4675 T310_4675 T310_4633 T310_4633 T310_4925 T310_4925 T310_4418 T310_4418 T310_4421 T310_4421 T310_4348 T310_4348 T310_4299 T310_4299 T310_4763 T310_4763 T310_4261 T310_4261 T310_4004 T310_4004 T310_4019 T310_4019 T310_4508 T310_4508 T310_4288 T310_4288 T310_3996 T310_3996 T310_4439 T310_4439 T310_4180 T310_4180 T310_3877 T310_3877 T310_3632 T310_3632 T310_3664 T310_3664 T310_3911 T310_3911 T310_4121 T310_4121 T310_3509 T310_3509 T310_3321 T310_3321 T310_3024 T310_3024 T310_3034 T310_3034 T310_3693 T310_3693 T310_3713 T310_3713 T310_3663 T310_3663 T310_3367 T310_3367 T310_3111 T310_3111 T310_3604 T310_3604 T310_3502 T310_3502 T310_2928 T310_2928 T310_3532 T310_3532 T310_2843 T310_2843 T310_2825 T310_2825 T310_2780 T310_2780 T310_3203 T310_3203 T310_3112 T310_3112 T310_2876 T310_2876 T310_3200 T310_3200 T310_2779 T310_2779 T310_2564 T310_2564 T310_2791 T310_2791 T310_2056 T310_2056 T310_2453 T310_2453 T310_2125 T310_2125 T310_1943 T310_1943 T310_1896 T310_1896 T310_2027 T310_2027 T310_1838 T310_1838 T310_1962 T310_1962 T310_1892 T310_1892 T310_1634 T310_1634 T310_2012 T310_2012 T310_2185 T310_2185 T310_1597 T310_1597 T310_1868 T310_1868 T310_2015 T310_2015 T310_1314 T310_1314 T310_1694 T310_1694 T310_1727 T310_1727 T310_1747 T310_1747 T310_1210 T310_1210 T310_1033 T310_1033 T310_0965 T310_0965 LSM8 LSM8 T310_0852 T310_0852 T310_0668 T310_0668 T310_0695 T310_0695 T310_1323 T310_1323 T310_0602 T310_0602 T310_0572 T310_0572 T310_1223 T310_1223 LSM5 LSM5 T310_0987 T310_0987 T310_1059 T310_1059 T310_0348 T310_0348 T310_0484 T310_0484 T310_0205 T310_0205 T310_0093 T310_0093 T310_0403 T310_0403
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
T310_9980Uncharacterized protein. (145 aa)
T310_10217DUF455 domain protein. (398 aa)
T310_10120RNA helicase. (450 aa)
T310_10123Uncharacterized protein. (300 aa)
T310_10107WD_REPEATS_REGION domain-containing protein. (324 aa)
T310_10017DUF866 domain protein. (160 aa)
T310_9750Uncharacterized protein. (369 aa)
T310_9752Sen15 domain-containing protein. (215 aa)
T310_9762tRNA splicing 2' phosphotransferase 1. (324 aa)
T310_9549Uncharacterized protein. (442 aa)
T310_9629Splicing factor 3b, subunit 2. (558 aa)
T310_9511Cell cycle control protein (Cwf4). (775 aa)
T310_9561Sm domain-containing protein. (765 aa)
T310_9493Uncharacterized protein. (819 aa)
T310_9356Cell division control protein (Cdc5). (791 aa)
T310_9510Pre-mRNA splicing factor (Prp31). (523 aa)
T310_9257Pre-mRNA splicing factor. (686 aa)
T310_9292Cir_N domain-containing protein. (697 aa)
T310_8536Cell cycle control protein (Cwf23). (285 aa)
T310_8858MI domain-containing protein. (790 aa)
T310_9305mRNA splicing protein. (472 aa)
T310_8245Mitochondrial ATP-dependent RNA helicase Suv3. (719 aa)
T310_8249Uncharacterized protein. (229 aa)
T310_8176G-patch DNA repair protein (Drt111). (533 aa)
T310_8263mRNA splicing factor RNA helicase (Prp16). (920 aa)
T310_7988Uncharacterized protein. (320 aa)
T310_8130Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (120 aa)
T310_8276WD domain, G-beta repeat protein. (1029 aa)
T310_8244RNA helicase-like splicing factor (HRH1). (1139 aa)
T310_7827CID domain-containing protein. (897 aa)
T310_7917Uncharacterized protein. (624 aa)
T310_7879mRNA splicing factor (Prp18). (389 aa)
T310_7844MPN domain-containing protein. (2332 aa)
T310_8367mRNA splicing factor (Prp17). (582 aa)
T310_7958tRNA_int_endo domain-containing protein. (462 aa)
T310_7675Pre-mRNA splicing factor. (1311 aa)
T310_7625PWI domain-containing protein. (524 aa)
T310_7468Nuclear mRNA splicing factor. (1209 aa)
T310_8015U5 snRNP component Snu114. (988 aa)
T310_7296Cell cycle control protein (Cwf2). (426 aa)
T310_7377Uncharacterized protein. (545 aa)
T310_7884U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
T310_7847Cactin. (545 aa)
T310_7078Cell cycle control protein (Cwf19). (699 aa)
T310_7329RNA binding protein. (226 aa)
T310_6656DnaJ domain protein. (214 aa)
T310_6555DNA binding protein SART-1. (729 aa)
T310_6580Zinc knuckle transcription factor/splicing factor MSL5/ZFM1. (559 aa)
T310_6954PWI domain-containing protein. (568 aa)
T310_6886Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family. (165 aa)
T310_7082Splicing factor 3a subunit 2. (235 aa)
T310_6096U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (348 aa)
T310_6077Cell cycle control protein (Cwf8). (476 aa)
T310_6079U1 small nuclear ribonucleoprotein 70 kDa. (387 aa)
T310_6094Phosphoprotein phosphatase. (588 aa)
T310_6007Uncharacterized protein. (250 aa)
T310_6059Leucine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. (1218 aa)
T310_6211Uncharacterized protein. (907 aa)
T310_6165RNA binding protein. (302 aa)
T310_5607Peptidylprolyl isomerase. (576 aa)
T310_5802U4/U6 small nuclear ribonucleoprotein. (585 aa)
T310_5541Uncharacterized protein. (276 aa)
T310_5543DUF1716 domain protein. (613 aa)
T310_5884WD repeat protein. (325 aa)
T310_5889Transcriptional regulator Cwf13/SkiP. (589 aa)
T310_5397U5 snRNP complex subunit. (358 aa)
T310_5521Cap binding protein. (828 aa)
T310_5756Splicing factor 3b subunit 4. (347 aa)
T310_5326U1 small nuclear ribonucleoprotein A. (197 aa)
T310_5274tRNA-splicing endonuclease subunit Sen2; Constitutes one of the two catalytic subunit of the tRNA- splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural [...] (484 aa)
T310_5445RNA binding protein SwoK (Eurofung). (221 aa)
T310_5437mRNA splicing protein Yju2. (272 aa)
T310_5096mRNA splicing factor RNA helicase (Cdc28). (1211 aa)
T310_4858Nuclear protein SDK3. (330 aa)
T310_4807Uncharacterized protein. (253 aa)
T310_4822DUF2040 domain-containing protein. (463 aa)
T310_4636G-patch domain protein (Spp2). (557 aa)
T310_4675FHA domain protein SNIP1. (334 aa)
T310_4633Ubiquitin thiolesterase. (645 aa)
T310_4925Pre-RNA splicing factor Srp2. (320 aa)
T310_4418Uncharacterized protein. (579 aa)
T310_4421U1 snRNP splicing complex subunit (Luc7). (212 aa)
T310_4348Uncharacterized protein. (283 aa)
T310_4299Sm domain-containing protein. (230 aa)
T310_4763U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (548 aa)
T310_4261Tuftelin-interacting protein TIP39. (785 aa)
T310_4004RNP domain protein. (352 aa)
T310_4019SAP domain-containing protein. (612 aa)
T310_4508Pre-mRNA splicing factor ATP-dependent RNA helicase Prp43. (762 aa)
T310_4288U6 snRNA-associated Sm-like protein LSm6. (136 aa)
T310_3996Regulatory factor Sgt1. (590 aa)
T310_4439NmrA domain-containing protein. (297 aa)
T310_4180RNA binding domain protein. (352 aa)
T310_3877SAC3/GANP domain protein. (525 aa)
T310_3632Pre-RNA splicing factor Slt11. (371 aa)
T310_3664Uncharacterized protein. (353 aa)
T310_3911Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. (1467 aa)
T310_4121Uncharacterized protein. (176 aa)
T310_3509Nuclear mRNA splicing factor-associated protein. (400 aa)
T310_3321Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (126 aa)
T310_3024Uncharacterized protein. (822 aa)
T310_3034Uncharacterized protein. (349 aa)
T310_3693U2 auxiliary factor small subunit. (204 aa)
T310_3713Uncharacterized protein. (168 aa)
T310_3663Serine protein kinase Sky1. (584 aa)
T310_3367Tyrosine--tRNA ligase. (613 aa)
T310_3111RNA helicase. (825 aa)
T310_3604mRNA splicing factor (Prp1/Zer1). (980 aa)
T310_3502G-patch domain protein. (1066 aa)
T310_2928Uncharacterized protein. (293 aa)
T310_3532mRNA splicing protein (Prp5). (451 aa)
T310_2843CwfJ domain protein. (550 aa)
T310_2825RNP domain protein. (386 aa)
T310_2780Uncharacterized protein. (431 aa)
T310_3203Microfibrillar-associated protein MfaP1. (537 aa)
T310_3112mRNA splicing protein (Prp39). (646 aa)
T310_2876RED_N domain-containing protein. (582 aa)
T310_3200Small nuclear ribonucleoprotein Sm D2. (176 aa)
T310_2779Uncharacterized protein. (442 aa)
T310_2564Isy1-like splicing family protein. (254 aa)
T310_2791WD_REPEATS_REGION domain-containing protein. (531 aa)
T310_2056KH domain-containing protein. (613 aa)
T310_2453Pre-mRNA-splicing factor cwc24. (343 aa)
T310_2125Uncharacterized protein. (379 aa)
T310_1943Uncharacterized protein. (270 aa)
T310_1896RNA lariat debranching enzyme. (752 aa)
T310_2027Uncharacterized protein. (614 aa)
T310_1838RNA splicing factor (Pad-1). (574 aa)
T310_1962RNA helicase. (1227 aa)
T310_1892tRNA_int_end_N2 domain-containing protein. (455 aa)
T310_1634F-box domain-containing protein. (658 aa)
T310_2012RNA ligase (ATP). (893 aa)
T310_2185Pre-mRNA splicing helicase. (2143 aa)
T310_1597Uncharacterized protein. (380 aa)
T310_1868Uncharacterized protein. (141 aa)
T310_2015Uncharacterized protein. (205 aa)
T310_1314ATP dependent DNA ligase domain protein. (1667 aa)
T310_1694Tudor domain-containing protein. (302 aa)
T310_1727C2H2 finger domain protein. (291 aa)
T310_1747DEAD box RNA helicase HelA; Belongs to the DEAD box helicase family. (661 aa)
T310_121037S ribosomal protein MRP4. (183 aa)
T310_1033Serine/threonine protein kinase (Prp4). (797 aa)
T310_0965Splicing factor 3B subunit 1. (1230 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
T310_0852RRM domain-containing protein. (159 aa)
T310_0668DNA repair and transcription protein (Xab2). (822 aa)
T310_0695Propanediol-phosphate dehydrogenase. (257 aa)
T310_1323Endo-1,3(4)-beta-glucanase. (382 aa)
T310_0602AAR2 family protein. (480 aa)
T310_0572SNRNP27 domain-containing protein. (256 aa)
T310_1223BCAS2 family protein. (219 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (201 aa)
T310_0987Transformer-SR ribonucleoprotein. (290 aa)
T310_1059SYF2 splicing factor domain protein. (400 aa)
T310_0348Uncharacterized protein. (160 aa)
T310_0484Uncharacterized protein. (387 aa)
T310_0205Uncharacterized protein. (631 aa)
T310_0093Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (96 aa)
T310_0403Glutathione S-transferase. (271 aa)
Your Current Organism:
Rasamsonia emersonii
NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64
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