STRINGSTRING
T310_0087 T310_0087 T310_9803 T310_9803 T310_9468 T310_9468 T310_9754 T310_9754 T310_9483 T310_9483 T310_9989 T310_9989 T310_9099 T310_9099 T310_9550 T310_9550 T310_8516 T310_8516 T310_9098 T310_9098 T310_7966 T310_7966 T310_8382 T310_8382 T310_7891 T310_7891 T310_7792 T310_7792 T310_7533 T310_7533 T310_7890 T310_7890 T310_7895 T310_7895 T310_7507 T310_7507 T310_7330 T310_7330 T310_7286 T310_7286 T310_7341 T310_7341 T310_7089 T310_7089 T310_7287 T310_7287 T310_7406 T310_7406 T310_6807 T310_6807 T310_6749 T310_6749 T310_6696 T310_6696 T310_6752 T310_6752 T310_6601 T310_6601 T310_6419 T310_6419 T310_6655 T310_6655 T310_6153 T310_6153 T310_5424 T310_5424 T310_5886 T310_5886 T310_5389 T310_5389 T310_5154 T310_5154 T310_5273 T310_5273 T310_4631 T310_4631 YTM1 YTM1 T310_5056 T310_5056 T310_5213 T310_5213 T310_4892 T310_4892 T310_4311 T310_4311 T310_0418 T310_0418 T310_4894 T310_4894 T310_4635 T310_4635 T310_4153 T310_4153 T310_4046 T310_4046 T310_3859 T310_3859 T310_3732 T310_3732 T310_3593 T310_3593 T310_3605 T310_3605 T310_3503 T310_3503 T310_3677 T310_3677 T310_3731 T310_3731 T310_3321 T310_3321 T310_3209 T310_3209 T310_3327 T310_3327 T310_2901 T310_2901 T310_3277 T310_3277 T310_2804 T310_2804 NOP7 NOP7 T310_3210 T310_3210 T310_2748 T310_2748 T310_0367 T310_0367 T310_3119 T310_3119 T310_2842 T310_2842 T310_2442 T310_2442 T310_2372 T310_2372 T310_2382 T310_2382 T310_2786 T310_2786 ERB1 ERB1 T310_2534 T310_2534 T310_2457 T310_2457 T310_1967 T310_1967 T310_1954 T310_1954 T310_2136 T310_2136 SPB1 SPB1 T310_1769 T310_1769 T310_1372 T310_1372 T310_2030 T310_2030 T310_1800 T310_1800 T310_0874 T310_0874 T310_0892 T310_0892 T310_1583 T310_1583 NAT10 NAT10 T310_0649 T310_0649 T310_0212 T310_0212 T310_0579 T310_0579 T310_0057 T310_0057 T310_0293 T310_0293
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
T310_0087Nucleolar GTP-binding protein 1. (1073 aa)
T310_9803rRNA processing protein. (302 aa)
T310_9468RNA helicase; Belongs to the DEAD box helicase family. (501 aa)
T310_9754Ribosome biogenesis protein Kri1. (674 aa)
T310_9483PUM-HD domain-containing protein. (715 aa)
T310_9989Sas10 domain-containing protein. (676 aa)
T310_9099Uncharacterized protein. (101 aa)
T310_9550Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (4906 aa)
T310_8516Uncharacterized protein. (233 aa)
T310_909860S ribosome biogenesis protein Brx1. (132 aa)
T310_7966Uncharacterized protein. (391 aa)
T310_838240S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (201 aa)
T310_7891Ribosome biogenesis protein Ssf2. (363 aa)
T310_7792Fibrillarin. (683 aa)
T310_7533U3 small nucleolar ribonucleoprotein IMP4. (411 aa)
T310_7890ATP-dependent rRNA helicase rrp3; Belongs to the DEAD box helicase family. (472 aa)
T310_7895Small nucleolar ribonucleoprotein complex subunit. (449 aa)
T310_7507RNA processing factor 1. (436 aa)
T310_7330DEAH-box RNA helicase (Dhr1). (1233 aa)
T310_7286Small nucleolar ribonucleoprotein complex subunit. (514 aa)
T310_7341Small nucleolar ribonucleoprotein complex subunit Utp15. (542 aa)
T310_7089ToxD protein. (541 aa)
T310_7287Pre-rRNA processing protein Tsr1. (811 aa)
T310_7406rRNA processing protein (Ebp2). (396 aa)
T310_680740S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (266 aa)
T310_6749WD domain protein. (910 aa)
T310_6696Small nucleolar ribonucleoprotein complex subunit Utp14. (981 aa)
T310_6752rRNA processing protein. (344 aa)
T310_6601Ribosome biogenesis protein (Bms1). (1841 aa)
T310_6419WD repeat protein. (716 aa)
T310_6655RNA helicase. (833 aa)
T310_6153U3 small nucleolar ribonucleoprotein Mpp10. (813 aa)
T310_5424RNA-binding protein required for biogenesis of the ribosomal 60S subunit. (139 aa)
T310_5886Small nucleolar ribonucleoprotein complex subunit (Pwp2). (908 aa)
T310_5389Ribosomal small subunit assembly protein. (326 aa)
T310_5154RIO1 family protein kinase. (657 aa)
T310_527320S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family. (428 aa)
T310_4631WD_REPEATS_REGION domain-containing protein. (637 aa)
YTM1Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (444 aa)
T310_5056Cellular morphogenesis protein (Bud22). (459 aa)
T310_5213Nop14-like family protein. (922 aa)
T310_4892DUF652 domain-containing protein. (207 aa)
T310_4311Small nucleolar ribonucleoprotein complex subunit. (1006 aa)
T310_0418Ribosome biogenesis protein NSA2. (258 aa)
T310_4894WD repeat protein. (1047 aa)
T310_4635Small nucleolar ribonucleoprotein complex subunit. (1013 aa)
T310_4153Uncharacterized protein. (321 aa)
T310_4046Low-temperature viability protein ltv1. (516 aa)
T310_3859Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (226 aa)
T310_3732Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family. (690 aa)
T310_3593Small nucleolar ribonucleoprotein complex subunit. (634 aa)
T310_3605rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (382 aa)
T310_3503Ribosomal RNA processing protein. (325 aa)
T310_3677WD repeat protein. (1010 aa)
T310_373160S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (190 aa)
T310_3321Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (126 aa)
T310_3209Uncharacterized protein. (366 aa)
T310_3327Uncharacterized protein. (411 aa)
T310_2901C2H2-type domain-containing protein. (114 aa)
T310_3277Uncharacterized protein. (396 aa)
T310_2804Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (311 aa)
NOP7Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (691 aa)
T310_3210Uncharacterized protein. (400 aa)
T310_2748Ribosome assembly protein Noc2. (763 aa)
T310_0367Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (458 aa)
T310_3119Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (398 aa)
T310_2842HEAT repeat protein (DRIM). (2636 aa)
T310_2442Protein SIK1. (866 aa)
T310_2372RNA helicase. (643 aa)
T310_2382Nucleolar protein 58. (610 aa)
T310_2786RNA-3'-phosphate cyclase family protein. (455 aa)
ERB1Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (796 aa)
T310_2534Uncharacterized protein. (400 aa)
T310_2457Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family. (259 aa)
T310_1967Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (325 aa)
T310_1954GTP binding protein. (562 aa)
T310_2136Ribosome biogenesis protein Noc4. (497 aa)
SPB1AdoMet-dependent rRNA methyltransferase SPB1; Histone methyltransferase that specifically methylates histone H3 to form H3K79me. This methylation is required for telomere silencing and for the pachytene checkpoint during the meiotic cell cycle by allowing the recruitment of RAD9 to double strand breaks. Nucleosomes are preferred as substrate compared to free histones. Belongs to the class I-like SAM-binding methyltransferase superfamily. DOT1 family. (1445 aa)
T310_1769U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (292 aa)
T310_1372HAD_SAK_1 domain-containing protein. (574 aa)
T310_2030AAA family ATPase/60S ribosome export protein Rix7. (741 aa)
T310_1800RNA helicase. (843 aa)
T310_0874HMG box protein. (309 aa)
T310_0892Pre-rRNA processing protein Mrd1. (973 aa)
T310_158360S ribosomal subunit biogenesis protein Nop16. (246 aa)
NAT10RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1212 aa)
T310_0649rRNA processing protein Bystin. (516 aa)
T310_0212U3 small nucleolar RNA-associated protein 22. (1129 aa)
T310_0579Protein MAK16; Belongs to the MAK16 family. (335 aa)
T310_0057KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (373 aa)
T310_0293rRNA biogenesis protein RRP5. (1830 aa)
Your Current Organism:
Rasamsonia emersonii
NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64
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