19 items (Rasamsonia emersonii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T310_10105	Alpha-actinin, sarcomeric (F-actin cross linking protein). (648 aa)
	T310_8833	Cytokinesis protein sepA. (410 aa)
	T310_8543	Cytokinesis protein SepA/Bni1. (707 aa)
	T310_8824	Cytokinesis protein sepA. (696 aa)
	T310_8393	Uncharacterized protein. (327 aa)
	T310_8454	BAR adaptor protein RVS167. (424 aa)
	T310_7615	Uncharacterized protein. (494 aa)
	T310_7150	Rho GTPase Rho4. (253 aa)
	T310_6881	Protein-tyrosine-phosphatase. (570 aa)
	T310_4913	Cell division control protein (Cdc15). (943 aa)
	T310_5176	LIM domain protein. (779 aa)
	T310_4105	Uncharacterized protein. (237 aa)
	T310_3892	Chitin synthase. (1310 aa)
	T310_3670	Profilin; Belongs to the profilin family. (131 aa)
	T310_2565	Myosin ATPase; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2407 aa)
	T310_1433	Actin, gamma. (375 aa)
	T310_1341	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments. (268 aa)
	T310_0548	Uncharacterized protein. (154 aa)
	T310_0097	Uncharacterized protein. (146 aa)

Your Current Organism:

Rasamsonia emersonii

NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T310_0097	T310_0548	A0A0F4Z5S0	A0A0F4Z4K3	Uncharacterized protein.	Uncharacterized protein.	0.840
T310_0097	T310_10105	A0A0F4Z5S0	A0A0F4YF94	Uncharacterized protein.	Alpha-actinin, sarcomeric (F-actin cross linking protein).	0.610
T310_0097	T310_1433	A0A0F4Z5S0	A0A0F4Z1Z0	Uncharacterized protein.	Actin, gamma.	0.753
T310_0097	T310_2565	A0A0F4Z5S0	A0A0F4YYL7	Uncharacterized protein.	Myosin ATPase; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.970
T310_0097	T310_4105	A0A0F4Z5S0	A0A0F4YU71	Uncharacterized protein.	Uncharacterized protein.	0.610
T310_0097	T310_4913	A0A0F4Z5S0	A0A0F4YS27	Uncharacterized protein.	Cell division control protein (Cdc15).	0.685
T310_0097	T310_5176	A0A0F4Z5S0	A0A0F4YT64	Uncharacterized protein.	LIM domain protein.	0.609
T310_0097	T310_6881	A0A0F4Z5S0	A0A0F4YMU4	Uncharacterized protein.	Protein-tyrosine-phosphatase.	0.469
T310_0097	T310_7150	A0A0F4Z5S0	A0A0F4YMP0	Uncharacterized protein.	Rho GTPase Rho4.	0.652
T310_0097	T310_7615	A0A0F4Z5S0	A0A0F4YJF4	Uncharacterized protein.	Uncharacterized protein.	0.610
T310_0097	T310_8824	A0A0F4Z5S0	A0A0F4YID1	Uncharacterized protein.	Cytokinesis protein sepA.	0.505
T310_0097	T310_8833	A0A0F4Z5S0	A0A0F4YGN2	Uncharacterized protein.	Cytokinesis protein sepA.	0.505
T310_0548	T310_0097	A0A0F4Z4K3	A0A0F4Z5S0	Uncharacterized protein.	Uncharacterized protein.	0.840
T310_0548	T310_10105	A0A0F4Z4K3	A0A0F4YF94	Uncharacterized protein.	Alpha-actinin, sarcomeric (F-actin cross linking protein).	0.852
T310_0548	T310_1433	A0A0F4Z4K3	A0A0F4Z1Z0	Uncharacterized protein.	Actin, gamma.	0.969
T310_0548	T310_2565	A0A0F4Z4K3	A0A0F4YYL7	Uncharacterized protein.	Myosin ATPase; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.943
T310_0548	T310_3670	A0A0F4Z4K3	A0A0F4YW76	Uncharacterized protein.	Profilin; Belongs to the profilin family.	0.495
T310_0548	T310_4105	A0A0F4Z4K3	A0A0F4YU71	Uncharacterized protein.	Uncharacterized protein.	0.813
T310_0548	T310_5176	A0A0F4Z4K3	A0A0F4YT64	Uncharacterized protein.	LIM domain protein.	0.653
T310_0548	T310_7150	A0A0F4Z4K3	A0A0F4YMP0	Uncharacterized protein.	Rho GTPase Rho4.	0.648