137 items (Rasamsonia emersonii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T310_7219	Peptidase_S8 domain-containing protein. (1134 aa)
	T310_10250	Guanine nucleotide-binding protein alpha-3 subunit. (233 aa)
	T310_10107	WD_REPEATS_REGION domain-containing protein. (324 aa)
	T310_10025	C2H2 finger domain protein. (885 aa)
	T310_9985	RPN13_C domain-containing protein. (403 aa)
	T310_9829	COG2 domain-containing protein. (294 aa)
	T310_9686	Protein transport protein Sec61 alpha subunit. (478 aa)
	T310_9612	Uncharacterized protein. (639 aa)
	T310_10105	Alpha-actinin, sarcomeric (F-actin cross linking protein). (648 aa)
	T310_9435	Ras GTPase activating protein. (1749 aa)
	T310_9296	Cytoskeleton assembly control protein Sla2. (1048 aa)
	T310_9308	Uncharacterized protein. (1077 aa)
	T310_8470	Actin associated protein Wsp1. (401 aa)
	T310_9381	Myosin ATPase; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1267 aa)
	T310_8350	WH2 domain-containing protein. (119 aa)
	T310_8201	Uncharacterized protein. (733 aa)
	T310_8011	Ribosome recycling factor. (292 aa)
	T310_8009	Uncharacterized protein. (1509 aa)
	T310_8168	WD_REPEATS_REGION domain-containing protein. (903 aa)
	T310_8417	Transcription elongation factor SPT6. (1250 aa)
	T310_7615	Uncharacterized protein. (494 aa)
	T310_8305	Translational activator. (2301 aa)
	T310_7528	dGTPase. (333 aa)
	T310_8253	Uncharacterized protein. (459 aa)
	T310_7541	Translation factor SUI1. (143 aa)
	T310_7331	Uncharacterized protein. (120 aa)
	T310_7401	Uncharacterized protein. (465 aa)
	T310_7386	Translation elongation factor EF-2 subunit. (843 aa)
	T310_7540	Uncharacterized protein. (178 aa)
	T310_7014	Translation initiation factor 4B. (493 aa)
	T310_6755	NADH-ubiquinone oxidoreductase; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. (173 aa)
	T310_7159	SPT6_acidic domain-containing protein. (284 aa)
	T310_6673	SRP receptor beta subunit (Srp102). (320 aa)
	T310_6654	F-box domain-containing protein. (335 aa)
	T310_6784	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family. (528 aa)
	T310_7250	Uncharacterized protein. (271 aa)
	T310_6681	MIT domain-containing protein. (1805 aa)
	T310_6896	G protein complex alpha subunit GanA. (358 aa)
	T310_6378	Actin-related protein 2/3 complex subunit 5; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Arp2/3 complex plays a critical role in the control of cell morphogenesis via the modulation of cell polarity development. (202 aa)
	T310_6507	Signal recognition particle subunit SRP68; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane; Belongs to the SRP68 family. (608 aa)
	T310_6748	Arp2/3 complex 34 kDa subunit; Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. (340 aa)
	T310_6687	Actin-bundling protein Sac6. (674 aa)
	T310_6853	Regulatory protein SUAPRGA1. (311 aa)
	T310_6106	Calponin-like domain protein. (622 aa)
	T310_6184	L-fuculose-phosphate aldolase. (285 aa)
	T310_6075	Ribosome biogenesis protein Ria1. (1091 aa)
	T310_6515	Eukaryotic translation initiation factor 5A. (159 aa)
	T310_5799	RING zinc finger protein. (1651 aa)
	T310_5759	Transcriptional repressor TupA/RocA. (587 aa)
	T310_5723	Uncharacterized protein. (658 aa)
	T310_6107	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. (176 aa)
	T310_5344	Ndc80 complex component Nuf2. (463 aa)
	T310_4900	Transcription initiation factor IIF. (720 aa)
	T310_4770	DUF814 domain protein. (1177 aa)
	T310_4730	Phosphatidylinositol 3-kinase; Belongs to the PI3/PI4-kinase family. (2972 aa)
	T310_5362	GMF family protein. (141 aa)
	T310_5325	Actin-related protein 2/3 complex subunit; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks; Belongs to the WD repeat ARPC1 family. (357 aa)
	YTM1	Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (444 aa)
	T310_4617	Transcription elongation complex subunit (Cdc68). (1020 aa)
	T310_4502	Arp2/3 complex subunit (Arp3); Belongs to the actin family. (438 aa)
	T310_4445	60S acidic ribosomal protein P1; Belongs to the eukaryotic ribosomal protein P1/P2 family. (127 aa)
	T310_4624	UBX domain protein. (513 aa)
	T310_4458	Ima1_N domain-containing protein. (854 aa)
	T310_4401	Golgi reassembly stacking protein. (353 aa)
	T310_4348	Uncharacterized protein. (283 aa)
	T310_4105	Uncharacterized protein. (237 aa)
	T310_4076	Uncharacterized protein. (200 aa)
	T310_4101	Nucleotide excision repair protein RAD23. (386 aa)
	T310_3983	Eukaryotic translation initiation factor 3 subunit K; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (251 aa)
	TIF6	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family. (224 aa)
	T310_3967	Uncharacterized protein. (351 aa)
	T310_4368	Acetolactate synthase. (1045 aa)
	T310_3902	AN1 zinc finger protein. (320 aa)
	T310_4388	SNF2 family helicase/ATPase. (1112 aa)
	T310_3929	Uncharacterized protein; Belongs to the actin family. (478 aa)
	T310_3996	Regulatory factor Sgt1. (590 aa)
	T310_4232	Proteasome activator subunit 4. (1972 aa)
	nudF	Nuclear distribution protein nudF; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for nuclear migration during vegetative growth as well as development. Required for retrograde early endosome (EE) transport from the hyphal tip. Required for localization of dynein to the mitotic spindle poles. Recruits additional proteins to the dynein complex at SPBs; Belongs to the WD repeat LIS1/nudF family. (436 aa)
	T310_4385	Chromatin remodeling complex subunit (Chd3). (1650 aa)
	T310_3753	Uncharacterized protein. (416 aa)
	T310_3797	Coronin; Belongs to the WD repeat coronin family. (591 aa)
	T310_3630	Ribosome associated DnaJ chaperone Zuotin. (445 aa)
	T310_3533	Proteasome regulatory particle subunit (Nas6). (251 aa)
	T310_3561	HIT finger domain protein. (316 aa)
	T310_3359	RRN9 domain-containing protein. (688 aa)
	T310_3602	Uncharacterized protein. (1871 aa)
	T310_2878	Mago-bind domain-containing protein. (206 aa)
	T310_2870	Uncharacterized protein. (459 aa)
	T310_3384	Proteasome endopeptidase complex. (370 aa)
	NOP7	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (691 aa)
	T310_2747	Vacuolar protein sorting-associated protein 28; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. (244 aa)
	T310_2565	Myosin ATPase; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2407 aa)
	T310_2618	Uncharacterized protein. (174 aa)
	nudF-2	Nuclear distribution protein nudF; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for nuclear migration during vegetative growth as well as development. Required for retrograde early endosome (EE) transport from the hyphal tip. Required for localization of dynein to the mitotic spindle poles. Recruits additional proteins to the dynein complex at SPBs. (468 aa)
	T310_2604	Cerevisin; Belongs to the peptidase S8 family. (495 aa)
	T310_2388	Uncharacterized protein. (114 aa)
	T310_2912	NADH-ubiquinone oxidoreductase. (1091 aa)
	ERB1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (796 aa)
	T310_2036	Class II aldolase/adducin domain protein. (300 aa)
	T310_2667	Zinc metalloproteinase. (365 aa)
	T310_2581	Woronin body protein HexA. (561 aa)
	T310_1838	RNA splicing factor (Pad-1). (574 aa)
	T310_2001	Histone transcription regulator Hir1. (1605 aa)
	T310_1962	RNA helicase. (1227 aa)
	T310_1746	Class II aldolase/adducin domain protein. (292 aa)
	T310_1751	GTP-binding protein Obg. (558 aa)
	T310_2370	Actin-related protein RO7; Belongs to the actin family. (575 aa)
	T310_2345	Protein arginine methyltransferase RmtB; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family. (558 aa)
	T310_1797	Gelsolin repeat protein. (1631 aa)
	T310_1619	Eukaryotic translation initiation factor 2 alpha subunit. (308 aa)
	T310_1784	WD-repeat containing protein slp1. (619 aa)
	GUF1	Translation factor GUF1, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner. (661 aa)
	T310_1391	SRP54 domain-containing protein. (668 aa)
	T310_2030	AAA family ATPase/60S ribosome export protein Rix7. (741 aa)
	T310_1436	PH domain-containing protein. (1308 aa)
	T310_1456	Mitotic spindle checkpoint protein (Mad2). (165 aa)
	T310_1168	Histone H1. (208 aa)
	T310_1805	Uncharacterized protein. (310 aa)
	T310_1183	Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner. (710 aa)
	T310_1085	Actin-related protein 2/3 complex subunit 4; Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament; Belongs to the ARPC4 family. (177 aa)
	T310_1060	Epimerase domain-containing protein. (164 aa)
	T310_1706	Pre-rRNA processing protein. (341 aa)
	T310_1086	Ubiquitin carboxyl-terminal hydrolase. (595 aa)
	T310_1341	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments. (268 aa)
	T310_0863	Cyclic nucleotide-binding domain protein. (837 aa)
	T310_0832	WD repeat protein. (416 aa)
	T310_0977	FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...] (640 aa)
	T310_0731	Uncharacterized protein; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments. (1017 aa)
	T310_0548	Uncharacterized protein. (154 aa)
	T310_1084	Uncharacterized protein. (801 aa)
	T310_0422	WD_REPEATS_REGION domain-containing protein. (599 aa)
	T310_0432	MRS7 family protein. (577 aa)
	T310_0294	WD domain protein. (730 aa)
	T310_0280	Actin binding protein. (810 aa)
	T310_0689	Uncharacterized protein. (312 aa)
	T310_0724	C6 transcription factor. (567 aa)
	T310_0187	DUF500 and SH3 domain protein. (461 aa)

Your Current Organism:

Rasamsonia emersonii

NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ERB1	NOP7	A0A0F4Z0A7	A0A0F4YYD5	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.999
ERB1	T310_0422	A0A0F4Z0A7	A0A0F4Z4U9	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	WD_REPEATS_REGION domain-containing protein.	0.679
ERB1	T310_1784	A0A0F4Z0A7	A0A0F4Z1M0	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	WD-repeat containing protein slp1.	0.679
ERB1	T310_1962	A0A0F4Z0A7	A0A0F4Z0T4	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	RNA helicase.	0.540
ERB1	T310_2030	A0A0F4Z0A7	A0A0F4Z240	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	AAA family ATPase/60S ribosome export protein Rix7.	0.838
ERB1	T310_2870	A0A0F4Z0A7	A0A0F4YY44	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.679
ERB1	T310_4445	A0A0F4Z0A7	A0A0F4YT67	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	60S acidic ribosomal protein P1; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.412
ERB1	T310_6654	A0A0F4Z0A7	A0A0F4YM54	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	F-box domain-containing protein.	0.679
ERB1	T310_6784	A0A0F4Z0A7	A0A0F4YMC5	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family.	0.873
ERB1	T310_8168	A0A0F4Z0A7	A0A0F4YJ42	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	WD_REPEATS_REGION domain-containing protein.	0.679
ERB1	TIF6	A0A0F4Z0A7	A0A0F4YUM7	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.	0.969
ERB1	YTM1	A0A0F4Z0A7	A0A0F4YSS5	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.999
GUF1	T310_1456	A0A0F4Z213	A0A0F4Z2F8	Translation factor GUF1, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner.	Mitotic spindle checkpoint protein (Mad2).	0.492
GUF1	T310_1751	A0A0F4Z213	A0A0F4Z130	Translation factor GUF1, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner.	GTP-binding protein Obg.	0.442
GUF1	T310_4101	A0A0F4Z213	A0A0F4YUH9	Translation factor GUF1, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner.	Nucleotide excision repair protein RAD23.	0.511
GUF1	T310_8011	A0A0F4Z213	A0A0F4YII9	Translation factor GUF1, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner.	Ribosome recycling factor.	0.507
NOP7	ERB1	A0A0F4YYD5	A0A0F4Z0A7	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.999
NOP7	T310_0422	A0A0F4YYD5	A0A0F4Z4U9	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	WD_REPEATS_REGION domain-containing protein.	0.626
NOP7	T310_1706	A0A0F4YYD5	A0A0F4Z323	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Pre-rRNA processing protein.	0.596
NOP7	T310_1784	A0A0F4YYD5	A0A0F4Z1M0	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	WD-repeat containing protein slp1.	0.626