41 items (Rasamsonia emersonii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T310_8176	G-patch DNA repair protein (Drt111). (533 aa)
	T310_9257	Pre-mRNA splicing factor. (686 aa)
	T310_8249	Uncharacterized protein. (229 aa)
	T310_4418	Uncharacterized protein. (579 aa)
	T310_4822	DUF2040 domain-containing protein. (463 aa)
	T310_4807	Uncharacterized protein. (253 aa)
	T310_4858	Nuclear protein SDK3. (330 aa)
	T310_5445	RNA binding protein SwoK (Eurofung). (221 aa)
	T310_5397	U5 snRNP complex subunit. (358 aa)
	T310_5884	WD repeat protein. (325 aa)
	T310_5543	DUF1716 domain protein. (613 aa)
	T310_6096	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (348 aa)
	T310_6954	PWI domain-containing protein. (568 aa)
	T310_6555	DNA binding protein SART-1. (729 aa)
	T310_6656	DnaJ domain protein. (214 aa)
	T310_7078	Cell cycle control protein (Cwf19). (699 aa)
	T310_7847	Cactin. (545 aa)
	T310_7296	Cell cycle control protein (Cwf2). (426 aa)
	T310_7844	MPN domain-containing protein. (2332 aa)
	T310_7827	CID domain-containing protein. (897 aa)
	T310_0348	Uncharacterized protein. (160 aa)
	T310_1223	BCAS2 family protein. (219 aa)
	T310_0572	SNRNP27 domain-containing protein. (256 aa)
	T310_0852	RRM domain-containing protein. (159 aa)
	T310_1033	Serine/threonine protein kinase (Prp4). (797 aa)
	T310_1694	Tudor domain-containing protein. (302 aa)
	T310_1314	ATP dependent DNA ligase domain protein. (1667 aa)
	T310_2015	Uncharacterized protein. (205 aa)
	T310_1868	Uncharacterized protein. (141 aa)
	T310_1838	RNA splicing factor (Pad-1). (574 aa)
	T310_3112	mRNA splicing protein (Prp39). (646 aa)
	T310_2928	Uncharacterized protein. (293 aa)
	T310_3502	G-patch domain protein. (1066 aa)
	T310_3024	Uncharacterized protein. (822 aa)
	T310_3911	Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. (1467 aa)
	T310_3996	Regulatory factor Sgt1. (590 aa)
	T310_4348	Uncharacterized protein. (283 aa)
	T310_10217	DUF455 domain protein. (398 aa)
	T310_10123	Uncharacterized protein. (300 aa)
	T310_9549	Uncharacterized protein. (442 aa)
	T310_9511	Cell cycle control protein (Cwf4). (775 aa)

Your Current Organism:

Rasamsonia emersonii

NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T310_0348	T310_1694	A0A0F4Z527	A0A0F4Z2F5	Uncharacterized protein.	Tudor domain-containing protein.	0.471
T310_0572	T310_1033	A0A0F4Z4D3	A0A0F4Z347	SNRNP27 domain-containing protein.	Serine/threonine protein kinase (Prp4).	0.507
T310_0572	T310_1314	A0A0F4Z4D3	A0A0F4Z2B6	SNRNP27 domain-containing protein.	ATP dependent DNA ligase domain protein.	0.690
T310_0572	T310_2928	A0A0F4Z4D3	A0A0F4YXS8	SNRNP27 domain-containing protein.	Uncharacterized protein.	0.507
T310_0572	T310_3502	A0A0F4Z4D3	A0A0F4YXS3	SNRNP27 domain-containing protein.	G-patch domain protein.	0.443
T310_0572	T310_4807	A0A0F4Z4D3	A0A0F4YSF0	SNRNP27 domain-containing protein.	Uncharacterized protein.	0.507
T310_0572	T310_5397	A0A0F4Z4D3	A0A0F4YQQ3	SNRNP27 domain-containing protein.	U5 snRNP complex subunit.	0.832
T310_0572	T310_6096	A0A0F4Z4D3	A0A0F4YNQ3	SNRNP27 domain-containing protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.532
T310_0572	T310_6555	A0A0F4Z4D3	A0A0F4YME4	SNRNP27 domain-containing protein.	DNA binding protein SART-1.	0.900
T310_0572	T310_7844	A0A0F4Z4D3	A0A0F4YJC5	SNRNP27 domain-containing protein.	MPN domain-containing protein.	0.806
T310_0852	T310_1223	A0A0F4Z3S1	A0A0F4Z4G2	RRM domain-containing protein.	BCAS2 family protein.	0.826
T310_0852	T310_1314	A0A0F4Z3S1	A0A0F4Z2B6	RRM domain-containing protein.	ATP dependent DNA ligase domain protein.	0.464
T310_0852	T310_3911	A0A0F4Z3S1	A0A0F4YVZ6	RRM domain-containing protein.	Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome.	0.884
T310_0852	T310_4348	A0A0F4Z3S1	A0A0F4YU62	RRM domain-containing protein.	Uncharacterized protein.	0.662
T310_0852	T310_4807	A0A0F4Z3S1	A0A0F4YSF0	RRM domain-containing protein.	Uncharacterized protein.	0.742
T310_0852	T310_4858	A0A0F4Z3S1	A0A0F4YS38	RRM domain-containing protein.	Nuclear protein SDK3.	0.780
T310_0852	T310_5397	A0A0F4Z3S1	A0A0F4YQQ3	RRM domain-containing protein.	U5 snRNP complex subunit.	0.638
T310_0852	T310_5445	A0A0F4Z3S1	A0A0F4YRP5	RRM domain-containing protein.	RNA binding protein SwoK (Eurofung).	0.773
T310_0852	T310_6096	A0A0F4Z3S1	A0A0F4YNQ3	RRM domain-containing protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.420
T310_0852	T310_7844	A0A0F4Z3S1	A0A0F4YJC5	RRM domain-containing protein.	MPN domain-containing protein.	0.776