22 items (Rasamsonia emersonii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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Predicted Interactions

gene neighborhood

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Your Input:
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	T310_1727	C2H2 finger domain protein. (291 aa)
	T310_2185	Pre-mRNA splicing helicase. (2143 aa)
	T310_2125	Uncharacterized protein. (379 aa)
	T310_2791	WD_REPEATS_REGION domain-containing protein. (531 aa)
	T310_3200	Small nuclear ribonucleoprotein Sm D2. (176 aa)
	T310_3604	mRNA splicing factor (Prp1/Zer1). (980 aa)
	T310_3321	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (126 aa)
	T310_4288	U6 snRNA-associated Sm-like protein LSm6. (136 aa)
	T310_4299	Sm domain-containing protein. (230 aa)
	T310_5802	U4/U6 small nuclear ribonucleoprotein. (585 aa)
	T310_6886	Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family. (165 aa)
	T310_6555	DNA binding protein SART-1. (729 aa)
	T310_7884	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	T310_8015	U5 snRNP component Snu114. (988 aa)
	T310_7844	MPN domain-containing protein. (2332 aa)
	T310_7879	mRNA splicing factor (Prp18). (389 aa)
	T310_8130	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (120 aa)
	T310_9510	Pre-mRNA splicing factor (Prp31). (523 aa)
	T310_0093	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (96 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (201 aa)
	T310_0572	SNRNP27 domain-containing protein. (256 aa)

Your Current Organism:

Rasamsonia emersonii

NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM5	LSM8	A0A0F4Z4I0	A0A0F4Z3P5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM5	T310_0093	A0A0F4Z4I0	A0A0F4Z6D5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.989
LSM5	T310_0572	A0A0F4Z4I0	A0A0F4Z4D3	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	SNRNP27 domain-containing protein.	0.864
LSM5	T310_1727	A0A0F4Z4I0	A0A0F4Z2U0	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	C2H2 finger domain protein.	0.929
LSM5	T310_2125	A0A0F4Z4I0	A0A0F4Z0F8	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Uncharacterized protein.	0.980
LSM5	T310_2185	A0A0F4Z4I0	A0A0F4Z1J7	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Pre-mRNA splicing helicase.	0.982
LSM5	T310_2791	A0A0F4Z4I0	A0A0F4Z005	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	WD_REPEATS_REGION domain-containing protein.	0.969
LSM5	T310_3200	A0A0F4Z4I0	A0A0F4YYP6	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Small nuclear ribonucleoprotein Sm D2.	0.989
LSM5	T310_3321	A0A0F4Z4I0	A0A0F4YWP7	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.945
LSM5	T310_3604	A0A0F4Z4I0	A0A0F4YXQ4	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	mRNA splicing factor (Prp1/Zer1).	0.966
LSM5	T310_4288	A0A0F4Z4I0	A0A0F4YV25	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm6.	0.999
LSM5	T310_4299	A0A0F4Z4I0	A0A0F4YUA0	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Sm domain-containing protein.	0.950
LSM5	T310_5802	A0A0F4Z4I0	A0A0F4YQ27	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	U4/U6 small nuclear ribonucleoprotein.	0.949
LSM5	T310_6555	A0A0F4Z4I0	A0A0F4YME4	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	DNA binding protein SART-1.	0.987
LSM5	T310_6886	A0A0F4Z4I0	A0A0F4YMV3	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.	0.953
LSM5	T310_7844	A0A0F4Z4I0	A0A0F4YJC5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	MPN domain-containing protein.	0.959
LSM5	T310_7884	A0A0F4Z4I0	A0A0F4YKR0	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.998
LSM5	T310_8015	A0A0F4Z4I0	A0A0F4YKA8	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	U5 snRNP component Snu114.	0.955
LSM5	T310_8130	A0A0F4Z4I0	A0A0F4YII3	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.973
LSM5	T310_9510	A0A0F4Z4I0	A0A0F4YG27	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Pre-mRNA splicing factor (Prp31).	0.946