39 items (Rasamsonia emersonii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T310_9629	Splicing factor 3b, subunit 2. (558 aa)
	T310_9511	Cell cycle control protein (Cwf4). (775 aa)
	T310_9493	Uncharacterized protein. (819 aa)
	T310_9257	Pre-mRNA splicing factor. (686 aa)
	T310_8472	Benzoate 4-monooxygenase cytochrome P450; Belongs to the cytochrome P450 family. (509 aa)
	T310_8263	mRNA splicing factor RNA helicase (Prp16). (920 aa)
	T310_8130	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (120 aa)
	T310_8244	RNA helicase-like splicing factor (HRH1). (1139 aa)
	T310_7879	mRNA splicing factor (Prp18). (389 aa)
	T310_7468	Nuclear mRNA splicing factor. (1209 aa)
	T310_8015	U5 snRNP component Snu114. (988 aa)
	T310_7296	Cell cycle control protein (Cwf2). (426 aa)
	T310_7329	RNA binding protein. (226 aa)
	T310_6954	PWI domain-containing protein. (568 aa)
	T310_7082	Splicing factor 3a subunit 2. (235 aa)
	T310_6096	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (348 aa)
	T310_6079	U1 small nuclear ribonucleoprotein 70 kDa. (387 aa)
	T310_6435	Uncharacterized protein. (384 aa)
	T310_5756	Splicing factor 3b subunit 4. (347 aa)
	T310_5326	U1 small nuclear ribonucleoprotein A. (197 aa)
	T310_5437	mRNA splicing protein Yju2. (272 aa)
	T310_4418	Uncharacterized protein. (579 aa)
	T310_4421	U1 snRNP splicing complex subunit (Luc7). (212 aa)
	T310_4299	Sm domain-containing protein. (230 aa)
	T310_4763	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (548 aa)
	T310_4261	Tuftelin-interacting protein TIP39. (785 aa)
	T310_3632	Pre-RNA splicing factor Slt11. (371 aa)
	T310_3911	Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. (1467 aa)
	T310_3509	Nuclear mRNA splicing factor-associated protein. (400 aa)
	T310_2780	Uncharacterized protein. (431 aa)
	T310_3203	Microfibrillar-associated protein MfaP1. (537 aa)
	T310_3112	mRNA splicing protein (Prp39). (646 aa)
	T310_2779	Uncharacterized protein. (442 aa)
	T310_2027	Uncharacterized protein. (614 aa)
	T310_2162	Cytochrome P450. (523 aa)
	T310_1314	ATP dependent DNA ligase domain protein. (1667 aa)
	T310_0965	Splicing factor 3B subunit 1. (1230 aa)
	T310_0668	DNA repair and transcription protein (Xab2). (822 aa)
	T310_0695	Propanediol-phosphate dehydrogenase. (257 aa)

Your Current Organism:

Rasamsonia emersonii

NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T310_0668	T310_0695	A0A0F4Z443	A0A0F4Z448	DNA repair and transcription protein (Xab2).	Propanediol-phosphate dehydrogenase.	0.987
T310_0668	T310_0965	A0A0F4Z443	A0A0F4Z375	DNA repair and transcription protein (Xab2).	Splicing factor 3B subunit 1.	0.941
T310_0668	T310_1314	A0A0F4Z443	A0A0F4Z2B6	DNA repair and transcription protein (Xab2).	ATP dependent DNA ligase domain protein.	0.959
T310_0668	T310_2027	A0A0F4Z443	A0A0F4Z0Q0	DNA repair and transcription protein (Xab2).	Uncharacterized protein.	0.930
T310_0668	T310_3203	A0A0F4Z443	A0A0F4YY38	DNA repair and transcription protein (Xab2).	Microfibrillar-associated protein MfaP1.	0.805
T310_0668	T310_3632	A0A0F4Z443	A0A0F4YVI3	DNA repair and transcription protein (Xab2).	Pre-RNA splicing factor Slt11.	0.997
T310_0668	T310_3911	A0A0F4Z443	A0A0F4YVZ6	DNA repair and transcription protein (Xab2).	Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome.	0.997
T310_0668	T310_4261	A0A0F4Z443	A0A0F4YUH1	DNA repair and transcription protein (Xab2).	Tuftelin-interacting protein TIP39.	0.932
T310_0668	T310_4299	A0A0F4Z443	A0A0F4YUA0	DNA repair and transcription protein (Xab2).	Sm domain-containing protein.	0.951
T310_0668	T310_4418	A0A0F4Z443	A0A0F4YTC9	DNA repair and transcription protein (Xab2).	Uncharacterized protein.	0.412
T310_0668	T310_4763	A0A0F4Z443	A0A0F4YUB3	DNA repair and transcription protein (Xab2).	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.672
T310_0668	T310_5326	A0A0F4Z443	A0A0F4YQZ0	DNA repair and transcription protein (Xab2).	U1 small nuclear ribonucleoprotein A.	0.953
T310_0668	T310_5437	A0A0F4Z443	A0A0F4YRR0	DNA repair and transcription protein (Xab2).	mRNA splicing protein Yju2.	0.987
T310_0668	T310_5756	A0A0F4Z443	A0A0F4YQW2	DNA repair and transcription protein (Xab2).	Splicing factor 3b subunit 4.	0.886
T310_0668	T310_7082	A0A0F4Z443	A0A0F4YMV4	DNA repair and transcription protein (Xab2).	Splicing factor 3a subunit 2.	0.942
T310_0668	T310_7296	A0A0F4Z443	A0A0F4YKE5	DNA repair and transcription protein (Xab2).	Cell cycle control protein (Cwf2).	0.987
T310_0668	T310_7329	A0A0F4Z443	A0A0F4YM73	DNA repair and transcription protein (Xab2).	RNA binding protein.	0.931
T310_0668	T310_7468	A0A0F4Z443	A0A0F4YK18	DNA repair and transcription protein (Xab2).	Nuclear mRNA splicing factor.	0.939
T310_0668	T310_7879	A0A0F4Z443	A0A0F4YJ98	DNA repair and transcription protein (Xab2).	mRNA splicing factor (Prp18).	0.838
T310_0668	T310_8015	A0A0F4Z443	A0A0F4YKA8	DNA repair and transcription protein (Xab2).	U5 snRNP component Snu114.	0.989