44 items (Rasamsonia emersonii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T310_9814	TAFII28 domain-containing protein. (405 aa)
	T310_7146	Acyl_transf_3 domain-containing protein. (426 aa)
	T310_7054	Transcription factor TFIIE complex alpha subunit. (412 aa)
	T310_7044	DNA directed RNA polymerase II 15 kDa subunit. (132 aa)
	T310_7391	Uncharacterized protein. (247 aa)
	T310_7618	RNA polymerase II transcription elongation factor (Ctr9). (1218 aa)
	T310_7571	RNA polymerase II transcription factor protein. (1002 aa)
	T310_9711	BTP domain-containing protein. (215 aa)
	T310_9710	Transcription initiation factor TFIID subunit 7. (489 aa)
	T310_9842	TFIIH complex helicase Ssl2. (830 aa)
	T310_2781	Uncharacterized protein. (1269 aa)
	T310_2531	Uncharacterized protein. (481 aa)
	T310_3121	Uncharacterized protein. (348 aa)
	T310_2687	Bromodomain associated domain protein. (358 aa)
	T310_2948	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (294 aa)
	T310_3913	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (433 aa)
	T310_4493	TFIID and and SAGA complex TAF10 subunit. (326 aa)
	T310_4556	Cyclin Ccl1. (436 aa)
	T310_4605	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (462 aa)
	T310_4403	Histone acetyltransferase. (1104 aa)
	T310_4504	Transcription factor TFIIH subunit Tfb4. (455 aa)
	T310_4848	DNA-directed RNA polymerase. (133 aa)
	T310_4833	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (403 aa)
	T310_4832	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (994 aa)
	T310_4900	Transcription initiation factor IIF. (720 aa)
	T310_4968	Uncharacterized protein. (562 aa)
	T310_5187	DNA-directed RNA polymerase. (339 aa)
	T310_5390	Uncharacterized protein. (252 aa)
	T310_6527	RNA polymerase II transcription elongation factor Rtf1p. (623 aa)
	T310_2499	Meiotic recombination protein Ski8/Rec14. (465 aa)
	T310_2017	Complex: TFIID is composed of TBP. (462 aa)
	T310_1771	Transcription initiation factor TFIID, 31kD subunit. (292 aa)
	T310_2128	Transcription initiation factor iif, beta subunit. (403 aa)
	T310_1339	WD_REPEATS_REGION domain-containing protein. (788 aa)
	T310_1785	Transcription factor TFIIA complex subunit Toa1. (491 aa)
	T310_1186	Transcription factor Rba50. (481 aa)
	T310_1552	Uncharacterized protein. (604 aa)
	T310_1490	RNA polymerase II accessory factor Cdc73p. (484 aa)
	T310_1165	Transcription initiation factor TFIID subunit 12. (614 aa)
	T310_1072	DUF4211 domain-containing protein. (643 aa)
	T310_0923	DNA-directed RNA polymerase. (160 aa)
	T310_0596	Uncharacterized protein. (610 aa)
	T310_9817	Acyl_transf_3 domain-containing protein. (475 aa)
	T310_9812	Transcription initiation factor TFIID complex 60 kDa subunit. (445 aa)

Your Current Organism:

Rasamsonia emersonii

NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T310_0596	T310_0923	A0A0F4Z654	A0A0F4Z590	Uncharacterized protein.	DNA-directed RNA polymerase.	0.898
T310_0596	T310_1490	A0A0F4Z654	A0A0F4Z2Z1	Uncharacterized protein.	RNA polymerase II accessory factor Cdc73p.	0.998
T310_0596	T310_2128	A0A0F4Z654	A0A0F4Z1V0	Uncharacterized protein.	Transcription initiation factor iif, beta subunit.	0.641
T310_0596	T310_2499	A0A0F4Z654	A0A0F4Z0N3	Uncharacterized protein.	Meiotic recombination protein Ski8/Rec14.	0.983
T310_0596	T310_2531	A0A0F4Z654	A0A0F4YZC8	Uncharacterized protein.	Uncharacterized protein.	0.991
T310_0596	T310_4848	A0A0F4Z654	A0A0F4YSS3	Uncharacterized protein.	DNA-directed RNA polymerase.	0.898
T310_0596	T310_4900	A0A0F4Z654	A0A0F4YS50	Uncharacterized protein.	Transcription initiation factor IIF.	0.503
T310_0596	T310_5187	A0A0F4Z654	A0A0F4YR68	Uncharacterized protein.	DNA-directed RNA polymerase.	0.951
T310_0596	T310_6527	A0A0F4Z654	A0A0F4YNP6	Uncharacterized protein.	RNA polymerase II transcription elongation factor Rtf1p.	0.995
T310_0596	T310_7044	A0A0F4Z654	A0A0F4YLJ5	Uncharacterized protein.	DNA directed RNA polymerase II 15 kDa subunit.	0.898
T310_0596	T310_7618	A0A0F4Z654	A0A0F4YJY4	Uncharacterized protein.	RNA polymerase II transcription elongation factor (Ctr9).	0.997
T310_0923	T310_0596	A0A0F4Z590	A0A0F4Z654	DNA-directed RNA polymerase.	Uncharacterized protein.	0.898
T310_0923	T310_1072	A0A0F4Z590	A0A0F4Z4U3	DNA-directed RNA polymerase.	DUF4211 domain-containing protein.	0.791
T310_0923	T310_1165	A0A0F4Z590	A0A0F4Z3Z9	DNA-directed RNA polymerase.	Transcription initiation factor TFIID subunit 12.	0.871
T310_0923	T310_1339	A0A0F4Z590	A0A0F4Z2A3	DNA-directed RNA polymerase.	WD_REPEATS_REGION domain-containing protein.	0.833
T310_0923	T310_1490	A0A0F4Z590	A0A0F4Z2Z1	DNA-directed RNA polymerase.	RNA polymerase II accessory factor Cdc73p.	0.915
T310_0923	T310_1552	A0A0F4Z590	A0A0F4Z2W1	DNA-directed RNA polymerase.	Uncharacterized protein.	0.833
T310_0923	T310_1771	A0A0F4Z590	A0A0F4Z150	DNA-directed RNA polymerase.	Transcription initiation factor TFIID, 31kD subunit.	0.830
T310_0923	T310_1785	A0A0F4Z590	A0A0F4Z2E1	DNA-directed RNA polymerase.	Transcription factor TFIIA complex subunit Toa1.	0.958
T310_0923	T310_2017	A0A0F4Z590	A0A0F4Z0P2	DNA-directed RNA polymerase.	Complex: TFIID is composed of TBP.	0.878