STRINGSTRING
T310_3389 T310_3389 T310_0367 T310_0367 T310_0064 T310_0064 T310_0349 T310_0349 T310_0212 T310_0212 T310_0366 T310_0366 T310_0916 T310_0916 NAT10 NAT10 T310_1699 T310_1699 T310_2136 T310_2136 T310_2534 T310_2534 T310_2786 T310_2786 T310_2372 T310_2372 T310_2691 T310_2691 T310_2748 T310_2748 T310_2745 T310_2745 T310_3527 T310_3527 T310_3593 T310_3593 T310_4894 T310_4894 T310_5213 T310_5213 T310_5056 T310_5056 T310_5389 T310_5389 T310_5484 T310_5484 T310_5886 T310_5886 T310_6153 T310_6153 T310_6098 T310_6098 T310_6201 T310_6201 T310_6419 T310_6419 T310_6578 T310_6578 T310_6749 T310_6749 T310_7089 T310_7089 T310_7392 T310_7392 T310_7533 T310_7533 T310_8113 T310_8113 T310_8169 T310_8169 T310_9245 T310_9245
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
T310_3389F-box domain protein. (1037 aa)
T310_0367Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (458 aa)
T310_0064Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family. (516 aa)
T310_0349Ribosomal biogenesis protein Gar2. (444 aa)
T310_0212U3 small nucleolar RNA-associated protein 22. (1129 aa)
T310_0366Fungal specific transcription factor. (776 aa)
T310_091660S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (312 aa)
NAT10RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1212 aa)
T310_1699Uncharacterized protein. (583 aa)
T310_2136Ribosome biogenesis protein Noc4. (497 aa)
T310_2534Uncharacterized protein. (400 aa)
T310_2786RNA-3'-phosphate cyclase family protein. (455 aa)
T310_2372RNA helicase. (643 aa)
T310_2691rRNA biogenesis protein rrp36. (351 aa)
T310_2748Ribosome assembly protein Noc2. (763 aa)
T310_2745RNA helicase. (770 aa)
T310_3527CCAAT-box-binding transcription factor. (1152 aa)
T310_3593Small nucleolar ribonucleoprotein complex subunit. (634 aa)
T310_4894WD repeat protein. (1047 aa)
T310_5213Nop14-like family protein. (922 aa)
T310_5056Cellular morphogenesis protein (Bud22). (459 aa)
T310_5389Ribosomal small subunit assembly protein. (326 aa)
T310_5484RING finger domain protein (Rnf10). (743 aa)
T310_5886Small nucleolar ribonucleoprotein complex subunit (Pwp2). (908 aa)
T310_6153U3 small nucleolar ribonucleoprotein Mpp10. (813 aa)
T310_6098RNA helicase. (652 aa)
T310_6201C6 transcription factor. (697 aa)
T310_6419WD repeat protein. (716 aa)
T310_6578RNA helicase; Belongs to the DEAD box helicase family. (603 aa)
T310_6749WD domain protein. (910 aa)
T310_7089ToxD protein. (541 aa)
T310_7392Ribosomal protein of the small subunit rps28; Belongs to the universal ribosomal protein uS12 family. (145 aa)
T310_7533U3 small nucleolar ribonucleoprotein IMP4. (411 aa)
T310_8113RNA binding protein. (305 aa)
T310_8169Small nucleolar ribonucleoprotein complex component (Utp5). (863 aa)
T310_9245Uncharacterized protein. (705 aa)
Your Current Organism:
Rasamsonia emersonii
NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64
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