56 items (Rasamsonia emersonii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T310_9814	TAFII28 domain-containing protein. (405 aa)
	T310_9812	Transcription initiation factor TFIID complex 60 kDa subunit. (445 aa)
	T310_9817	Acyl_transf_3 domain-containing protein. (475 aa)
	T310_9842	TFIIH complex helicase Ssl2. (830 aa)
	T310_9710	Transcription initiation factor TFIID subunit 7. (489 aa)
	T310_9478	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (631 aa)
	T310_9711	BTP domain-containing protein. (215 aa)
	T310_7987	DNA-directed DNA polymerase. (600 aa)
	T310_7571	RNA polymerase II transcription factor protein. (1002 aa)
	T310_7618	RNA polymerase II transcription elongation factor (Ctr9). (1218 aa)
	T310_7391	Uncharacterized protein. (247 aa)
	T310_7044	DNA directed RNA polymerase II 15 kDa subunit. (132 aa)
	T310_7054	Transcription factor TFIIE complex alpha subunit. (412 aa)
	T310_7146	Acyl_transf_3 domain-containing protein. (426 aa)
	T310_6527	RNA polymerase II transcription elongation factor Rtf1p. (623 aa)
	T310_5390	Uncharacterized protein. (252 aa)
	T310_5187	DNA-directed RNA polymerase. (339 aa)
	T310_4968	Uncharacterized protein. (562 aa)
	T310_4900	Transcription initiation factor IIF. (720 aa)
	T310_4832	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (994 aa)
	T310_5092	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (358 aa)
	T310_4833	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (403 aa)
	T310_4848	DNA-directed RNA polymerase. (133 aa)
	T310_4504	Transcription factor TFIIH subunit Tfb4. (455 aa)
	T310_4403	Histone acetyltransferase. (1104 aa)
	T310_4605	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (462 aa)
	T310_4556	Cyclin Ccl1. (436 aa)
	T310_4493	TFIID and and SAGA complex TAF10 subunit. (326 aa)
	T310_3913	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (433 aa)
	T310_3226	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (669 aa)
	T310_3767	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (639 aa)
	T310_2948	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (294 aa)
	T310_2687	Bromodomain associated domain protein. (358 aa)
	T310_3121	Uncharacterized protein. (348 aa)
	T310_2531	Uncharacterized protein. (481 aa)
	T310_2781	Uncharacterized protein. (1269 aa)
	T310_1913	DNA-directed RNA polymerase III RPC4. (259 aa)
	T310_2499	Meiotic recombination protein Ski8/Rec14. (465 aa)
	T310_2017	Complex: TFIID is composed of TBP. (462 aa)
	T310_1771	Transcription initiation factor TFIID, 31kD subunit. (292 aa)
	T310_2128	Transcription initiation factor iif, beta subunit. (403 aa)
	T310_1529	DNA polymerase. (1428 aa)
	T310_1339	WD_REPEATS_REGION domain-containing protein. (788 aa)
	T310_1785	Transcription factor TFIIA complex subunit Toa1. (491 aa)
	T310_1186	Transcription factor Rba50. (481 aa)
	T310_1552	Uncharacterized protein. (604 aa)
	T310_1490	RNA polymerase II accessory factor Cdc73p. (484 aa)
	T310_1269	DNA-directed RNA polymerase. (374 aa)
	T310_1449	DNA-directed RNA polymerase. (140 aa)
	T310_1165	Transcription initiation factor TFIID subunit 12. (614 aa)
	T310_0956	DNA primase large subunit; DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication; Belongs to the eukaryotic-type primase large subunit family. (501 aa)
	T310_1072	DUF4211 domain-containing protein. (643 aa)
	T310_0923	DNA-directed RNA polymerase. (160 aa)
	T310_0679	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (130 aa)
	T310_0596	Uncharacterized protein. (610 aa)
	T310_0281	DNA-directed RNA polymerase III RPC4. (240 aa)

Your Current Organism:

Rasamsonia emersonii

NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T310_0281	T310_0679	A0A0F4Z6E1	A0A0F4Z5B0	DNA-directed RNA polymerase III RPC4.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.970
T310_0281	T310_0923	A0A0F4Z6E1	A0A0F4Z590	DNA-directed RNA polymerase III RPC4.	DNA-directed RNA polymerase.	0.968
T310_0281	T310_1269	A0A0F4Z6E1	A0A0F4Z306	DNA-directed RNA polymerase III RPC4.	DNA-directed RNA polymerase.	0.973
T310_0281	T310_1449	A0A0F4Z6E1	A0A0F4Z3S4	DNA-directed RNA polymerase III RPC4.	DNA-directed RNA polymerase.	0.964
T310_0281	T310_1913	A0A0F4Z6E1	A0A0F4Z0I0	DNA-directed RNA polymerase III RPC4.	DNA-directed RNA polymerase III RPC4.	0.899
T310_0281	T310_3767	A0A0F4Z6E1	A0A0F4YX64	DNA-directed RNA polymerase III RPC4.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.974
T310_0281	T310_5092	A0A0F4Z6E1	A0A0F4YSP5	DNA-directed RNA polymerase III RPC4.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.972
T310_0281	T310_5187	A0A0F4Z6E1	A0A0F4YR68	DNA-directed RNA polymerase III RPC4.	DNA-directed RNA polymerase.	0.911
T310_0281	T310_7044	A0A0F4Z6E1	A0A0F4YLJ5	DNA-directed RNA polymerase III RPC4.	DNA directed RNA polymerase II 15 kDa subunit.	0.851
T310_0596	T310_0679	A0A0F4Z654	A0A0F4Z5B0	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.898
T310_0596	T310_0923	A0A0F4Z654	A0A0F4Z590	Uncharacterized protein.	DNA-directed RNA polymerase.	0.898
T310_0596	T310_1269	A0A0F4Z654	A0A0F4Z306	Uncharacterized protein.	DNA-directed RNA polymerase.	0.796
T310_0596	T310_1490	A0A0F4Z654	A0A0F4Z2Z1	Uncharacterized protein.	RNA polymerase II accessory factor Cdc73p.	0.998
T310_0596	T310_2128	A0A0F4Z654	A0A0F4Z1V0	Uncharacterized protein.	Transcription initiation factor iif, beta subunit.	0.641
T310_0596	T310_2499	A0A0F4Z654	A0A0F4Z0N3	Uncharacterized protein.	Meiotic recombination protein Ski8/Rec14.	0.983
T310_0596	T310_2531	A0A0F4Z654	A0A0F4YZC8	Uncharacterized protein.	Uncharacterized protein.	0.991
T310_0596	T310_4848	A0A0F4Z654	A0A0F4YSS3	Uncharacterized protein.	DNA-directed RNA polymerase.	0.898
T310_0596	T310_4900	A0A0F4Z654	A0A0F4YS50	Uncharacterized protein.	Transcription initiation factor IIF.	0.503
T310_0596	T310_5187	A0A0F4Z654	A0A0F4YR68	Uncharacterized protein.	DNA-directed RNA polymerase.	0.951
T310_0596	T310_6527	A0A0F4Z654	A0A0F4YNP6	Uncharacterized protein.	RNA polymerase II transcription elongation factor Rtf1p.	0.995