21 items (Rasamsonia emersonii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T310_0010	Zinc-binding dehydrogenase. (620 aa)
	T310_9769	Alcohol dehydrogenase, zinc-containing. (356 aa)
	T310_9368	Alcohol dehydrogenase. (397 aa)
	T310_7760	PKS_ER domain-containing protein. (348 aa)
	T310_7526	Alcohol dehydrogenase (NADP(+)). (383 aa)
	T310_8163	Threonine synthase; Belongs to the zinc-containing alcohol dehydrogenase family. (998 aa)
	T310_7750	Alcohol dehydrogenase. (365 aa)
	T310_6386	F-box and WD40 domain protein. (1340 aa)
	T310_5932	PKS_ER domain-containing protein. (420 aa)
	T310_5481	Alcohol dehydrogenase 1. (1625 aa)
	T310_4979	S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily. (392 aa)
	T310_4528	Alcohol dehydrogenase. (361 aa)
	T310_4347	Alcohol dehydrogenase, zinc-containing. (365 aa)
	T310_4206	Alcohol dehydrogenase. (357 aa)
	T310_4215	Formaldehyde dehydrogenase. (413 aa)
	T310_3883	Formaldehyde dehydrogenase. (384 aa)
	T310_4167	S-(Hydroxymethyl)glutathione dehydrogenase. (432 aa)
	T310_3681	L-iditol 2-dehydrogenase. (356 aa)
	T310_4082	DNA helicase. (2290 aa)
	T310_2741	L-arabinitol 4-dehydrogenase. (388 aa)
	T310_0245	L-iditol 2-dehydrogenase. (410 aa)

Your Current Organism:

Rasamsonia emersonii

NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T310_0010	T310_0245	A0A0F4Z7U4	A0A0F4Z589	Zinc-binding dehydrogenase.	L-iditol 2-dehydrogenase.	0.463
T310_0010	T310_2741	A0A0F4Z7U4	A0A0F4Z056	Zinc-binding dehydrogenase.	L-arabinitol 4-dehydrogenase.	0.463
T310_0010	T310_3681	A0A0F4Z7U4	A0A0F4YVM8	Zinc-binding dehydrogenase.	L-iditol 2-dehydrogenase.	0.463
T310_0010	T310_3883	A0A0F4Z7U4	A0A0F4YVE7	Zinc-binding dehydrogenase.	Formaldehyde dehydrogenase.	0.463
T310_0010	T310_4167	A0A0F4Z7U4	A0A0F4YVF1	Zinc-binding dehydrogenase.	S-(Hydroxymethyl)glutathione dehydrogenase.	0.463
T310_0010	T310_4215	A0A0F4Z7U4	A0A0F4YV99	Zinc-binding dehydrogenase.	Formaldehyde dehydrogenase.	0.463
T310_0010	T310_4347	A0A0F4Z7U4	A0A0F4YTT7	Zinc-binding dehydrogenase.	Alcohol dehydrogenase, zinc-containing.	0.463
T310_0010	T310_4979	A0A0F4Z7U4	A0A0F4YS97	Zinc-binding dehydrogenase.	S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	0.650
T310_0010	T310_5932	A0A0F4Z7U4	A0A0F4YP73	Zinc-binding dehydrogenase.	PKS_ER domain-containing protein.	0.650
T310_0010	T310_7526	A0A0F4Z7U4	A0A0F4YJR4	Zinc-binding dehydrogenase.	Alcohol dehydrogenase (NADP(+)).	0.516
T310_0010	T310_7760	A0A0F4Z7U4	A0A0F4YJ35	Zinc-binding dehydrogenase.	PKS_ER domain-containing protein.	0.513
T310_0010	T310_9368	A0A0F4Z7U4	A0A0F4YFV4	Zinc-binding dehydrogenase.	Alcohol dehydrogenase.	0.463
T310_0010	T310_9769	A0A0F4Z7U4	A0A0F4YFF1	Zinc-binding dehydrogenase.	Alcohol dehydrogenase, zinc-containing.	0.463
T310_0245	T310_0010	A0A0F4Z589	A0A0F4Z7U4	L-iditol 2-dehydrogenase.	Zinc-binding dehydrogenase.	0.463
T310_0245	T310_2741	A0A0F4Z589	A0A0F4Z056	L-iditol 2-dehydrogenase.	L-arabinitol 4-dehydrogenase.	0.769
T310_0245	T310_4206	A0A0F4Z589	A0A0F4YU06	L-iditol 2-dehydrogenase.	Alcohol dehydrogenase.	0.456
T310_0245	T310_4528	A0A0F4Z589	A0A0F4YT80	L-iditol 2-dehydrogenase.	Alcohol dehydrogenase.	0.463
T310_0245	T310_5481	A0A0F4Z589	A0A0F4YS85	L-iditol 2-dehydrogenase.	Alcohol dehydrogenase 1.	0.456
T310_0245	T310_6386	A0A0F4Z589	A0A0F4YNG9	L-iditol 2-dehydrogenase.	F-box and WD40 domain protein.	0.456
T310_0245	T310_7526	A0A0F4Z589	A0A0F4YJR4	L-iditol 2-dehydrogenase.	Alcohol dehydrogenase (NADP(+)).	0.456