(22 nodes) Polyketide synthase, beta-ketoacyl synthase domain network (Rasamsonia emersonii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T310_0867	Polyketide synthase. (1853 aa)
	T310_0662	3-oxoacyl-[acyl-carrier-protein] reductase; Belongs to the thiolase-like superfamily. Fungal fatty acid synthetase subunit alpha family. (1871 aa)
	T310_9851	Lovastatin nonaketide synthase. (2638 aa)
	T310_8307	Polyketide synthase. (1571 aa)
	T310_8308	PKS_KS domain-containing protein. (178 aa)
	T310_8112	Polyketide synthase. (744 aa)
	T310_7953	Hybrid NRPS/PKS protein 1. (3944 aa)
	T310_6794	Polyketide synthase. (1253 aa)
	T310_6405	6-deoxyerythronolide-B synthase. (2137 aa)
	T310_6161	Lovastatin nonaketide synthase. (2507 aa)
	T310_4323	Enoyl-[acyl-carrier-protein] reductase (NADH). (2494 aa)
	T310_3923	Lovastatin nonaketide synthase. (2441 aa)
	T310_2626	Lovastatin nonaketide synthase. (2439 aa)
	T310_2718	Polyketide synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (519 aa)
	T310_2726	6-deoxyerythronolide-B synthase. (2148 aa)
	T310_1833	Polyketide synthase. (2277 aa)
	T310_2225	6-deoxyerythronolide-B synthase. (2004 aa)
	T310_1651	BcPKS5, polyketide synthase. (4038 aa)
	T310_0718	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (350 aa)
	T310_1661	Enoyl-[acyl-carrier-protein] reductase (NADH). (2617 aa)
	T310_0722	Uncharacterized protein. (1795 aa)
	T310_1175	Lovastatin nonaketide synthase. (2645 aa)

Your Current Organism:

Rasamsonia emersonii

NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T310_0662	T310_0718	A0A0F4Z4U4	A0A0F4Z5A6	3-oxoacyl-[acyl-carrier-protein] reductase; Belongs to the thiolase-like superfamily. Fungal fatty acid synthetase subunit alpha family.	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.898
T310_0718	T310_0662	A0A0F4Z5A6	A0A0F4Z4U4	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	3-oxoacyl-[acyl-carrier-protein] reductase; Belongs to the thiolase-like superfamily. Fungal fatty acid synthetase subunit alpha family.	0.898
T310_0718	T310_2718	A0A0F4Z5A6	A0A0F4YYR5	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	Polyketide synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.877
T310_0718	T310_8112	A0A0F4Z5A6	A0A0F4YK25	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	Polyketide synthase.	0.833
T310_0718	T310_8307	A0A0F4Z5A6	A0A0F4YHR0	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	Polyketide synthase.	0.410
T310_0718	T310_8308	A0A0F4Z5A6	A0A0F4YI25	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	PKS_KS domain-containing protein.	0.941
T310_0722	T310_8112	A0A0F4Z568	A0A0F4YK25	Uncharacterized protein.	Polyketide synthase.	0.614
T310_0722	T310_8308	A0A0F4Z568	A0A0F4YI25	Uncharacterized protein.	PKS_KS domain-containing protein.	0.577
T310_0867	T310_8112	A0A0F4Z4T5	A0A0F4YK25	Polyketide synthase.	Polyketide synthase.	0.587
T310_0867	T310_8308	A0A0F4Z4T5	A0A0F4YI25	Polyketide synthase.	PKS_KS domain-containing protein.	0.758
T310_1175	T310_8112	A0A0F4Z407	A0A0F4YK25	Lovastatin nonaketide synthase.	Polyketide synthase.	0.605
T310_1175	T310_8308	A0A0F4Z407	A0A0F4YI25	Lovastatin nonaketide synthase.	PKS_KS domain-containing protein.	0.588
T310_1651	T310_8112	A0A0F4Z1T7	A0A0F4YK25	BcPKS5, polyketide synthase.	Polyketide synthase.	0.553
T310_1651	T310_8308	A0A0F4Z1T7	A0A0F4YI25	BcPKS5, polyketide synthase.	PKS_KS domain-containing protein.	0.563
T310_1661	T310_8112	A0A0F4Z361	A0A0F4YK25	Enoyl-[acyl-carrier-protein] reductase (NADH).	Polyketide synthase.	0.618
T310_1661	T310_8308	A0A0F4Z361	A0A0F4YI25	Enoyl-[acyl-carrier-protein] reductase (NADH).	PKS_KS domain-containing protein.	0.580
T310_1833	T310_8112	A0A0F4Z0P5	A0A0F4YK25	Polyketide synthase.	Polyketide synthase.	0.577
T310_1833	T310_8308	A0A0F4Z0P5	A0A0F4YI25	Polyketide synthase.	PKS_KS domain-containing protein.	0.641
T310_2225	T310_8112	A0A0F4Z1N5	A0A0F4YK25	6-deoxyerythronolide-B synthase.	Polyketide synthase.	0.581
T310_2225	T310_8308	A0A0F4Z1N5	A0A0F4YI25	6-deoxyerythronolide-B synthase.	PKS_KS domain-containing protein.	0.747