STRINGSTRING
T310_8143 T310_8143 T310_7408 T310_7408 T310_6788 T310_6788 T310_8193 T310_8193 T310_8253 T310_8253 T310_8202 T310_8202 T310_0207 T310_0207 T310_0287 T310_0287 T310_7335 T310_7335 T310_6238 T310_6238 PIF1 PIF1 T310_4115 T310_4115 T310_4039 T310_4039 T310_3329 T310_3329 T310_2308 T310_2308 T310_2055 T310_2055 T310_2284 T310_2284 T310_1343 T310_1343 T310_0541 T310_0541 T310_0304 T310_0304 T310_9467 T310_9467
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
T310_8143RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. (476 aa)
T310_7408Pseudouridylate synthase. (393 aa)
T310_6788Uncharacterized protein. (446 aa)
T310_8193Uncharacterized protein. (258 aa)
T310_8253Uncharacterized protein. (459 aa)
T310_8202Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (238 aa)
T310_0207Histone H2B; Belongs to the histone H2B family. (160 aa)
T310_0287Telo_bind domain-containing protein. (642 aa)
T310_7335Lectin C-type domain protein. (556 aa)
T310_6238H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (159 aa)
PIF1ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability. (709 aa)
T310_4115Pseudouridylate synthase family protein. (490 aa)
T310_4039SNF2 family helicase/ATPase. (1836 aa)
T310_3329Sister chromatid cohesion factor (Chl12). (1053 aa)
T310_2308RecQ family helicase MusN. (1607 aa)
T310_2055ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (512 aa)
T310_2284Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme. (1414 aa)
T310_1343HD superfamily hydrolase. (638 aa)
T310_05413'-5' exonuclease/helicase (Wrn). (1044 aa)
T310_0304Uncharacterized protein. (386 aa)
T310_9467Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (594 aa)
Your Current Organism:
Rasamsonia emersonii
NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64
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