66 items (Rasamsonia emersonii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T310_6340	DNA excision repair protein Rad2. (1117 aa)
	T310_6483	DNA repair protein rad14. (577 aa)
	T310_6493	UDP-galactopyranose mutase. (532 aa)
	T310_6788	Uncharacterized protein. (446 aa)
	T310_6932	DNA-directed RNA polymerase. (217 aa)
	T310_7044	DNA directed RNA polymerase II 15 kDa subunit. (132 aa)
	T310_6931	Uncharacterized protein. (541 aa)
	T310_7571	RNA polymerase II transcription factor protein. (1002 aa)
	T310_8469	ERCC4 domain-containing protein. (831 aa)
	T310_8406	Transcription elongation factor S-II. (296 aa)
	T310_8628	Pol polyprotein. (142 aa)
	T310_8931	Uncharacterized protein. (135 aa)
	T310_9467	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (594 aa)
	T310_9458	Uncharacterized protein. (117 aa)
	T310_9732	Transposon-encoded protein with TYA. (603 aa)
	T310_9954	Integrase catalytic domain-containing protein. (579 aa)
	T310_9842	TFIIH complex helicase Ssl2. (830 aa)
	T310_9849	Ubiquitinyl hydrolase 1; Belongs to the peptidase C19 family. (1260 aa)
	T310_9866	Integrase catalytic domain-containing protein. (1257 aa)
	T310_0443	Reverse transcriptase domain-containing protein. (206 aa)
	T310_0007	UV-damaged DNA binding protein. (1123 aa)
	T310_0360	Mating-type switch/DNA repair protein Swi10/Rad10. (331 aa)
	T310_0369	BZIP domain-containing protein. (337 aa)
	T310_0188	Telomere silencing protein Zds1. (1122 aa)
	T310_0679	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (130 aa)
	T310_0923	DNA-directed RNA polymerase. (160 aa)
	T310_0668	DNA repair and transcription protein (Xab2). (822 aa)
	T310_0832	WD repeat protein. (416 aa)
	T310_1735	DNA-directed RNA polymerase. (235 aa)
	T310_1779	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1743 aa)
	T310_2475	UmuC domain-containing protein. (394 aa)
	T310_2564	Isy1-like splicing family protein. (254 aa)
	T310_2419	Uncharacterized protein. (301 aa)
	T310_3121	Uncharacterized protein. (348 aa)
	T310_3198	Cullin; Belongs to the cullin family. (275 aa)
	T310_3451	Gag/polymerase/env polyprotein. (273 aa)
	T310_3202	SsDNA binding protein Ssb3. (154 aa)
	T310_3241	AAA domain-containing protein. (1265 aa)
	T310_3913	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (433 aa)
	T310_3911	Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. (1467 aa)
	T310_4327	Transposon-encoded protein with TYA. (1466 aa)
	T310_3841	Non-specific serine/threonine protein kinase. (1215 aa)
	T310_4354	Uncharacterized protein. (184 aa)
	T310_3879	Retrovirus polyprotein. (533 aa)
	T310_3880	Gag/polymerase/env polyprotein. (909 aa)
	T310_4108	Ubiquitin ligase subunit HrtA. (136 aa)
	T310_4195	Uncharacterized protein. (1557 aa)
	T310_4556	Cyclin Ccl1. (436 aa)
	T310_4420	Uncharacterized protein. (908 aa)
	T310_4369	TPR domain protein. (487 aa)
	T310_4605	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (462 aa)
	T310_4504	Transcription factor TFIIH subunit Tfb4. (455 aa)
	T310_4848	DNA-directed RNA polymerase. (133 aa)
	T310_4715	Ubiquitinyl hydrolase 1; Belongs to the peptidase C19 family. (1288 aa)
	T310_4833	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (403 aa)
	T310_5542	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1241 aa)
	T310_4938	DNA excision repair protein (Rad26L). (1033 aa)
	T310_5800	DNA repair helicase. (754 aa)
	T310_5197	Peptidyl prolyl cis-trans isomerase Cyclophilin. (153 aa)
	T310_5187	DNA-directed RNA polymerase. (339 aa)
	T310_6141	Uncharacterized protein. (163 aa)
	T310_6539	Peptidylprolyl isomerase. (342 aa)
	T310_6000	Uncharacterized protein. (1064 aa)
	T310_6077	Cell cycle control protein (Cwf8). (476 aa)
	T310_6205	Integrase catalytic domain-containing protein. (187 aa)
	T310_6350	Ubiquitin. (154 aa)

Your Current Organism:

Rasamsonia emersonii

NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T310_0007	T310_0360	A0A0F4Z6I7	A0A0F4Z6D4	UV-damaged DNA binding protein.	Mating-type switch/DNA repair protein Swi10/Rad10.	0.819
T310_0007	T310_0369	A0A0F4Z6I7	A0A0F4Z5Q1	UV-damaged DNA binding protein.	BZIP domain-containing protein.	0.786
T310_0007	T310_0679	A0A0F4Z6I7	A0A0F4Z5B0	UV-damaged DNA binding protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.901
T310_0007	T310_0832	A0A0F4Z6I7	A0A0F4Z3Q1	UV-damaged DNA binding protein.	WD repeat protein.	0.992
T310_0007	T310_0923	A0A0F4Z6I7	A0A0F4Z590	UV-damaged DNA binding protein.	DNA-directed RNA polymerase.	0.901
T310_0007	T310_1735	A0A0F4Z6I7	A0A0F4Z293	UV-damaged DNA binding protein.	DNA-directed RNA polymerase.	0.901
T310_0007	T310_1779	A0A0F4Z6I7	A0A0F4Z1L3	UV-damaged DNA binding protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.905
T310_0007	T310_2475	A0A0F4Z6I7	A0A0F4Z085	UV-damaged DNA binding protein.	UmuC domain-containing protein.	0.459
T310_0007	T310_3198	A0A0F4Z6I7	A0A0F4YY33	UV-damaged DNA binding protein.	Cullin; Belongs to the cullin family.	0.995
T310_0007	T310_3841	A0A0F4Z6I7	A0A0F4YV63	UV-damaged DNA binding protein.	Non-specific serine/threonine protein kinase.	0.927
T310_0007	T310_4108	A0A0F4Z6I7	A0A0F4YUR3	UV-damaged DNA binding protein.	Ubiquitin ligase subunit HrtA.	0.985
T310_0007	T310_4504	A0A0F4Z6I7	A0A0F4YTA1	UV-damaged DNA binding protein.	Transcription factor TFIIH subunit Tfb4.	0.671
T310_0007	T310_4556	A0A0F4Z6I7	A0A0F4YTK6	UV-damaged DNA binding protein.	Cyclin Ccl1.	0.789
T310_0007	T310_4605	A0A0F4Z6I7	A0A0F4YTE0	UV-damaged DNA binding protein.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.675
T310_0007	T310_4833	A0A0F4Z6I7	A0A0F4YSQ2	UV-damaged DNA binding protein.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.709
T310_0007	T310_4848	A0A0F4Z6I7	A0A0F4YSS3	UV-damaged DNA binding protein.	DNA-directed RNA polymerase.	0.900
T310_0007	T310_4938	A0A0F4Z6I7	A0A0F4YRW3	UV-damaged DNA binding protein.	DNA excision repair protein (Rad26L).	0.927
T310_0007	T310_5187	A0A0F4Z6I7	A0A0F4YR68	UV-damaged DNA binding protein.	DNA-directed RNA polymerase.	0.901
T310_0007	T310_5542	A0A0F4Z6I7	A0A0F4YS24	UV-damaged DNA binding protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.917
T310_0007	T310_5800	A0A0F4Z6I7	A0A0F4YRF1	UV-damaged DNA binding protein.	DNA repair helicase.	0.817