STRINGSTRING
T310_4130 T310_4130 T310_9842 T310_9842 T310_8406 T310_8406 T310_8285 T310_8285 T310_7571 T310_7571 T310_7998 T310_7998 T310_7291 T310_7291 T310_7282 T310_7282 T310_6931 T310_6931 T310_7044 T310_7044 T310_6966 T310_6966 T310_6932 T310_6932 T310_5877 T310_5877 T310_5187 T310_5187 T310_5800 T310_5800 T310_5542 T310_5542 T310_4900 T310_4900 T310_5471 T310_5471 T310_5379 T310_5379 T310_4833 T310_4833 T310_4848 T310_4848 T310_4617 T310_4617 T310_4504 T310_4504 T310_4605 T310_4605 T310_4420 T310_4420 T310_4556 T310_4556 T310_4687 T310_4687 T310_3913 T310_3913 T310_3121 T310_3121 T310_1891 T310_1891 T310_1779 T310_1779 T310_2128 T310_2128 T310_1735 T310_1735 T310_0977 T310_0977 T310_0923 T310_0923 T310_0679 T310_0679 T310_0116 T310_0116
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
T310_4130Cyclin-dependent kinase. (544 aa)
T310_9842TFIIH complex helicase Ssl2. (830 aa)
T310_8406Transcription elongation factor S-II. (296 aa)
T310_8285Cyclin; Belongs to the cyclin family. (1186 aa)
T310_7571RNA polymerase II transcription factor protein. (1002 aa)
T310_7998TPR domain protein. (379 aa)
T310_7291Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (124 aa)
T310_7282Uncharacterized protein. (813 aa)
T310_6931Uncharacterized protein. (541 aa)
T310_7044DNA directed RNA polymerase II 15 kDa subunit. (132 aa)
T310_6966Transcription initiation protein spt5. (884 aa)
T310_6932DNA-directed RNA polymerase. (217 aa)
T310_5877Protein kinase domain-containing protein. (592 aa)
T310_5187DNA-directed RNA polymerase. (339 aa)
T310_5800DNA repair helicase. (754 aa)
T310_5542DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1241 aa)
T310_4900Transcription initiation factor IIF. (720 aa)
T310_5471Cyclin. (441 aa)
T310_5379RNA polymerase II transcription factor SIII (Elongin) subunit A. (411 aa)
T310_4833Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (403 aa)
T310_4848DNA-directed RNA polymerase. (133 aa)
T310_4617Transcription elongation complex subunit (Cdc68). (1020 aa)
T310_4504Transcription factor TFIIH subunit Tfb4. (455 aa)
T310_4605General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (462 aa)
T310_4420Uncharacterized protein. (908 aa)
T310_4556Cyclin Ccl1. (436 aa)
T310_4687RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (837 aa)
T310_3913RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (433 aa)
T310_3121Uncharacterized protein. (348 aa)
T310_1891Skp1_POZ domain-containing protein; Belongs to the SKP1 family. (162 aa)
T310_1779DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1743 aa)
T310_2128Transcription initiation factor iif, beta subunit. (403 aa)
T310_1735DNA-directed RNA polymerase. (235 aa)
T310_0977FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...] (640 aa)
T310_0923DNA-directed RNA polymerase. (160 aa)
T310_0679DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (130 aa)
T310_0116Transcription initiation protein spt5. (127 aa)
Your Current Organism:
Rasamsonia emersonii
NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64
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