27 items (Rasamsonia emersonii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T310_4848	DNA-directed RNA polymerase. (133 aa)
	T310_9842	TFIIH complex helicase Ssl2. (830 aa)
	T310_7571	RNA polymerase II transcription factor protein. (1002 aa)
	T310_6931	Uncharacterized protein. (541 aa)
	T310_7044	DNA directed RNA polymerase II 15 kDa subunit. (132 aa)
	T310_6966	Transcription initiation protein spt5. (884 aa)
	T310_6932	DNA-directed RNA polymerase. (217 aa)
	T310_5521	Cap binding protein. (828 aa)
	T310_5187	DNA-directed RNA polymerase. (339 aa)
	T310_5800	DNA repair helicase. (754 aa)
	T310_5542	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1241 aa)
	T310_0720	mRNA-capping enzyme subunit alpha; Second step of mRNA capping. Transfer of the GMP moiety of GTP to the 5'-end of RNA via an enzyme-GMP covalent reaction intermediate; Belongs to the eukaryotic GTase family. (413 aa)
	T310_0116	Transcription initiation protein spt5. (127 aa)
	T310_0158	mRNA (Guanine-N(7)-)-methyltransferase. (731 aa)
	T310_0679	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (130 aa)
	T310_0923	DNA-directed RNA polymerase. (160 aa)
	T310_1735	DNA-directed RNA polymerase. (235 aa)
	T310_2128	Transcription initiation factor iif, beta subunit. (403 aa)
	T310_1779	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1743 aa)
	T310_3121	Uncharacterized protein. (348 aa)
	T310_3913	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (433 aa)
	T310_4556	Cyclin Ccl1. (436 aa)
	T310_4605	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (462 aa)
	T310_4504	Transcription factor TFIIH subunit Tfb4. (455 aa)
	T310_4833	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (403 aa)
	T310_5134	Polynucleotide 5'-phosphatase. (681 aa)
	T310_4900	Transcription initiation factor IIF. (720 aa)

Your Current Organism:

Rasamsonia emersonii

NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T310_0116	T310_0158	A0A0F4Z5N8	A0A0F4Z5J1	Transcription initiation protein spt5.	mRNA (Guanine-N(7)-)-methyltransferase.	0.821
T310_0116	T310_0679	A0A0F4Z5N8	A0A0F4Z5B0	Transcription initiation protein spt5.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.963
T310_0116	T310_0720	A0A0F4Z5N8	A0A0F4Z5X8	Transcription initiation protein spt5.	mRNA-capping enzyme subunit alpha; Second step of mRNA capping. Transfer of the GMP moiety of GTP to the 5'-end of RNA via an enzyme-GMP covalent reaction intermediate; Belongs to the eukaryotic GTase family.	0.855
T310_0116	T310_0923	A0A0F4Z5N8	A0A0F4Z590	Transcription initiation protein spt5.	DNA-directed RNA polymerase.	0.965
T310_0116	T310_1735	A0A0F4Z5N8	A0A0F4Z293	Transcription initiation protein spt5.	DNA-directed RNA polymerase.	0.969
T310_0116	T310_1779	A0A0F4Z5N8	A0A0F4Z1L3	Transcription initiation protein spt5.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.972
T310_0116	T310_2128	A0A0F4Z5N8	A0A0F4Z1V0	Transcription initiation protein spt5.	Transcription initiation factor iif, beta subunit.	0.906
T310_0116	T310_3121	A0A0F4Z5N8	A0A0F4YYB5	Transcription initiation protein spt5.	Uncharacterized protein.	0.703
T310_0116	T310_3913	A0A0F4Z5N8	A0A0F4YWK9	Transcription initiation protein spt5.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.717
T310_0116	T310_4504	A0A0F4Z5N8	A0A0F4YTA1	Transcription initiation protein spt5.	Transcription factor TFIIH subunit Tfb4.	0.687
T310_0116	T310_4556	A0A0F4Z5N8	A0A0F4YTK6	Transcription initiation protein spt5.	Cyclin Ccl1.	0.755
T310_0116	T310_4833	A0A0F4Z5N8	A0A0F4YSQ2	Transcription initiation protein spt5.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.839
T310_0116	T310_4848	A0A0F4Z5N8	A0A0F4YSS3	Transcription initiation protein spt5.	DNA-directed RNA polymerase.	0.960
T310_0116	T310_4900	A0A0F4Z5N8	A0A0F4YS50	Transcription initiation protein spt5.	Transcription initiation factor IIF.	0.750
T310_0116	T310_5134	A0A0F4Z5N8	A0A0F4YSM4	Transcription initiation protein spt5.	Polynucleotide 5'-phosphatase.	0.840
T310_0116	T310_5187	A0A0F4Z5N8	A0A0F4YR68	Transcription initiation protein spt5.	DNA-directed RNA polymerase.	0.970
T310_0116	T310_5521	A0A0F4Z5N8	A0A0F4YQT7	Transcription initiation protein spt5.	Cap binding protein.	0.716
T310_0116	T310_5542	A0A0F4Z5N8	A0A0F4YS24	Transcription initiation protein spt5.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.975
T310_0116	T310_6931	A0A0F4Z5N8	A0A0F4YLJ1	Transcription initiation protein spt5.	Uncharacterized protein.	0.907
T310_0116	T310_6932	A0A0F4Z5N8	A0A0F4YLW3	Transcription initiation protein spt5.	DNA-directed RNA polymerase.	0.969