STRINGSTRING
T310_0207 T310_0207 T310_9842 T310_9842 T310_9351 T310_9351 T310_7571 T310_7571 T310_7807 T310_7807 T310_7476 T310_7476 T310_6514 T310_6514 T310_5801 T310_5801 T310_5800 T310_5800 T310_4695 T310_4695 T310_4833 T310_4833 T310_4504 T310_4504 T310_4605 T310_4605 T310_4556 T310_4556 T310_4927 T310_4927 T310_4079 T310_4079 T310_3913 T310_3913 T310_2858 T310_2858 T310_3121 T310_3121 T310_1735 T310_1735 T310_1269 T310_1269 T310_0923 T310_0923 T310_0679 T310_0679
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
T310_0207Histone H2B; Belongs to the histone H2B family. (160 aa)
T310_9842TFIIH complex helicase Ssl2. (830 aa)
T310_9351DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (119 aa)
T310_7571RNA polymerase II transcription factor protein. (1002 aa)
T310_7807RNA polymerase I specific transcription initiation factor RRN3 superfamily. (694 aa)
T310_7476RNA polymerase I subunit Rpa43. (425 aa)
T310_6514Ubiquitin-like domain-containing protein. (747 aa)
T310_5801DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1695 aa)
T310_5800DNA repair helicase. (754 aa)
T310_4695SprT family metallopeptidase. (757 aa)
T310_4833Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (403 aa)
T310_4504Transcription factor TFIIH subunit Tfb4. (455 aa)
T310_4605General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (462 aa)
T310_4556Cyclin Ccl1. (436 aa)
T310_4927RNA polymerase I and III transcription factor complex component Tbp. (294 aa)
T310_4079DNA-directed RNA polymerase. (498 aa)
T310_3913RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (433 aa)
T310_2858DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1234 aa)
T310_3121Uncharacterized protein. (348 aa)
T310_1735DNA-directed RNA polymerase. (235 aa)
T310_1269DNA-directed RNA polymerase. (374 aa)
T310_0923DNA-directed RNA polymerase. (160 aa)
T310_0679DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (130 aa)
Your Current Organism:
Rasamsonia emersonii
NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64
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