49 items (Rasamsonia emersonii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T310_6904	Uncharacterized protein. (228 aa)
	T310_1700	Uncharacterized protein. (253 aa)
	T310_9359	Betaine-aldehyde dehydrogenase. (485 aa)
	T310_9390	Acid phosphatase. (303 aa)
	T310_9421	Flavin-containing amine oxidase. (1068 aa)
	T310_9517	3-hydroxyisobutyrate dehydrogenase. (858 aa)
	T310_7867	Amino_oxidase domain-containing protein. (497 aa)
	T310_8323	Amine oxidase. (500 aa)
	T310_7568	Protein kinase domain-containing protein. (209 aa)
	T310_7290	Uncharacterized protein. (293 aa)
	T310_0122	Aldehyde dehydrogenase (NAD(+)); Belongs to the aldehyde dehydrogenase family. (502 aa)
	T310_0611	Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (294 aa)
	T310_0463	Amine oxidase. (681 aa)
	T310_1040	Uncharacterized protein. (294 aa)
	T310_1336	Integral membrane protein. (624 aa)
	T310_1113	Amine oxidase. (506 aa)
	T310_1656	Aldehyde dehydrogenase (NAD+); Belongs to the aldehyde dehydrogenase family. (615 aa)
	T310_1053	T-complex protein 1, theta subunit. (593 aa)
	T310_1272	Uncharacterized protein. (152 aa)
	T310_2642	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family. (694 aa)
	T310_3072	Aldehyde dehydrogenase (NAD(+)); Belongs to the aldehyde dehydrogenase family. (528 aa)
	T310_3215	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family. (476 aa)
	CIA1	Probable cytosolic iron-sulfur protein assembly protein 1; Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins. (462 aa)
	T310_7545	Uncharacterized protein. (332 aa)
	T310_7275	Glutamate decarboxylase; Belongs to the group II decarboxylase family. (653 aa)
	T310_6765	C6 finger domain protein. (753 aa)
	T310_6899	Homoserine O-acetyltransferase. (546 aa)
	T310_6530	NADH dehydrogenase. (527 aa)
	T310_6487	Uncharacterized protein. (188 aa)
	T310_5808	Glutamate decarboxylase; Belongs to the group II decarboxylase family. (520 aa)
	T310_5933	Uncharacterized protein; Belongs to the aldehyde dehydrogenase family. (508 aa)
	T310_5825	MFS transporter; Belongs to the aldehyde dehydrogenase family. (1296 aa)
	T310_6006	Thioredoxin reductase. (277 aa)
	T310_5976	Aldehyde dehydrogenase (NAD(+)). (489 aa)
	T310_5306	Monoamine oxidase. (582 aa)
	T310_5366	Uncharacterized protein. (1116 aa)
	T310_5761	Uncharacterized protein. (410 aa)
	T310_5694	Glutamate decarboxylase. (582 aa)
	T310_5686	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (417 aa)
	T310_4545	Amine oxidase. (768 aa)
	T310_4884	Uncharacterized protein. (567 aa)
	T310_4576	Malonate-semialdehyde dehydrogenase (Acetylating). (583 aa)
	T310_4969	Amine oxidase. (548 aa)
	T310_4030	4-aminobutyrate aminotransferase. (190 aa)
	T310_3667	DEAD/DEAH box helicase. (2002 aa)
	T310_3835	3-hydroxyacyl-CoA dehydrogenase. (918 aa)
	T310_3392	Amine oxidase. (730 aa)
	T310_2962	Dihydropyrimidinase. (482 aa)
	T310_2939	DEAD/DEAH box DNA helicase (Mer3). (1494 aa)

Your Current Organism:

Rasamsonia emersonii

NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CIA1	T310_1700	A0A0F4Z020	A0A0F4Z177	Probable cytosolic iron-sulfur protein assembly protein 1; Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins.	Uncharacterized protein.	0.454
CIA1	T310_5694	A0A0F4Z020	A0A0F4YRN3	Probable cytosolic iron-sulfur protein assembly protein 1; Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins.	Glutamate decarboxylase.	0.520
T310_0122	T310_0463	A0A0F4Z7K2	A0A0F4Z4P8	Aldehyde dehydrogenase (NAD(+)); Belongs to the aldehyde dehydrogenase family.	Amine oxidase.	0.832
T310_0122	T310_0611	A0A0F4Z7K2	A0A0F4Z671	Aldehyde dehydrogenase (NAD(+)); Belongs to the aldehyde dehydrogenase family.	Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.479
T310_0122	T310_1040	A0A0F4Z7K2	A0A0F4Z3K9	Aldehyde dehydrogenase (NAD(+)); Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein.	0.418
T310_0122	T310_1113	A0A0F4Z7K2	A0A0F4Z3E2	Aldehyde dehydrogenase (NAD(+)); Belongs to the aldehyde dehydrogenase family.	Amine oxidase.	0.727
T310_0122	T310_1272	A0A0F4Z7K2	A0A0F4Z2F4	Aldehyde dehydrogenase (NAD(+)); Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein.	0.418
T310_0122	T310_2642	A0A0F4Z7K2	A0A0F4YYF9	Aldehyde dehydrogenase (NAD(+)); Belongs to the aldehyde dehydrogenase family.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.834
T310_0122	T310_3072	A0A0F4Z7K2	A0A0F4YYI3	Aldehyde dehydrogenase (NAD(+)); Belongs to the aldehyde dehydrogenase family.	Aldehyde dehydrogenase (NAD(+)); Belongs to the aldehyde dehydrogenase family.	0.618
T310_0122	T310_3215	A0A0F4Z7K2	A0A0F4YYR0	Aldehyde dehydrogenase (NAD(+)); Belongs to the aldehyde dehydrogenase family.	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family.	0.453
T310_0122	T310_3392	A0A0F4Z7K2	A0A0F4YXM8	Aldehyde dehydrogenase (NAD(+)); Belongs to the aldehyde dehydrogenase family.	Amine oxidase.	0.831
T310_0122	T310_3835	A0A0F4Z7K2	A0A0F4YWE9	Aldehyde dehydrogenase (NAD(+)); Belongs to the aldehyde dehydrogenase family.	3-hydroxyacyl-CoA dehydrogenase.	0.667
T310_0122	T310_4030	A0A0F4Z7K2	A0A0F4YVI8	Aldehyde dehydrogenase (NAD(+)); Belongs to the aldehyde dehydrogenase family.	4-aminobutyrate aminotransferase.	0.815
T310_0122	T310_4545	A0A0F4Z7K2	A0A0F4YT56	Aldehyde dehydrogenase (NAD(+)); Belongs to the aldehyde dehydrogenase family.	Amine oxidase.	0.832
T310_0122	T310_4576	A0A0F4Z7K2	A0A0F4YTH1	Aldehyde dehydrogenase (NAD(+)); Belongs to the aldehyde dehydrogenase family.	Malonate-semialdehyde dehydrogenase (Acetylating).	0.882
T310_0122	T310_4884	A0A0F4Z7K2	A0A0F4YTC2	Aldehyde dehydrogenase (NAD(+)); Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein.	0.506
T310_0122	T310_4969	A0A0F4Z7K2	A0A0F4YTQ8	Aldehyde dehydrogenase (NAD(+)); Belongs to the aldehyde dehydrogenase family.	Amine oxidase.	0.727
T310_0122	T310_5306	A0A0F4Z7K2	A0A0F4YR06	Aldehyde dehydrogenase (NAD(+)); Belongs to the aldehyde dehydrogenase family.	Monoamine oxidase.	0.503
T310_0122	T310_5694	A0A0F4Z7K2	A0A0F4YRN3	Aldehyde dehydrogenase (NAD(+)); Belongs to the aldehyde dehydrogenase family.	Glutamate decarboxylase.	0.838
T310_0122	T310_5761	A0A0F4Z7K2	A0A0F4YRI2	Aldehyde dehydrogenase (NAD(+)); Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein.	0.767