(152 nodes) Ribosome network (Rasamsonia emersonii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T310_6016	50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (300 aa)
	T310_10242	60S ribosomal protein L5. (300 aa)
	T310_10195	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (754 aa)
	T310_9986	60S ribosomal protein L6. (245 aa)
	T310_9808	Uncharacterized protein. (284 aa)
	T310_10110	37S ribosomal protein S16. (101 aa)
	T310_9542	Mitochondrial large ribosomal subunit protein L16; Belongs to the universal ribosomal protein uL16 family. (236 aa)
	T310_9744	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (335 aa)
	T310_9483	PUM-HD domain-containing protein. (715 aa)
	T310_9354	Uncharacterized protein. (1393 aa)
	T310_9475	60S ribosomal protein L35. (136 aa)
	T310_9830	Mitochondrial large ribosomal subunit protein L1. (300 aa)
	T310_9721	Mitochondrial deoxynucleotide carrier protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (383 aa)
	T310_8486	Uncharacterized protein. (272 aa)
	T310_8318	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (132 aa)
	T310_8192	Uncharacterized protein. (167 aa)
	T310_8295	60S ribosomal protein L4-A. (372 aa)
	T310_8002	50S ribosomal protein L2. (415 aa)
	T310_8382	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (201 aa)
	T310_7985	Cell division control protein Cdc31. (330 aa)
	T310_8069	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (491 aa)
	T310_7930	Ribosome biogenesis protein RLP24. (191 aa)
	T310_8154	60S ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family. (161 aa)
	T310_7721	37S ribosomal protein S12. (220 aa)
	T310_7585	Uncharacterized protein. (198 aa)
	T310_7958	tRNA_int_endo domain-containing protein. (462 aa)
	T310_7845	Ribosomal protein L34 protein. (120 aa)
	T310_7392	Ribosomal protein of the small subunit rps28; Belongs to the universal ribosomal protein uS12 family. (145 aa)
	T310_7762	Mitochondrial carrier protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (413 aa)
	T310_7676	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (388 aa)
	T310_7286	Small nucleolar ribonucleoprotein complex subunit. (514 aa)
	T310_7390	50S ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family. (204 aa)
	T310_6887	60S ribosomal protein L22. (124 aa)
	T310_7288	Urease accessory protein ureG. (278 aa)
	T310_6807	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (266 aa)
	T310_6691	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (203 aa)
	T310_7045	50S ribosomal protein L14; Belongs to the universal ribosomal protein uL14 family. (152 aa)
	T310_7001	Uncharacterized protein. (454 aa)
	T310_6514	Ubiquitin-like domain-containing protein. (747 aa)
	T310_6525	60S ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family. (128 aa)
	T310_6350	Ubiquitin. (154 aa)
	T310_6295	Uncharacterized protein. (296 aa)
	T310_6782	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (569 aa)
	T310_6296	40S ribosomal protein S9. (205 aa)
	T310_6695	Endo-1,3(4)-beta-glucanase. (883 aa)
	T310_6080	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (236 aa)
	T310_6547	60S ribosomal protein L26-1. (116 aa)
	T310_6297	60S ribosomal protein L21. (144 aa)
	T310_5757	Mitochondrial folate carrier protein Flx1; Belongs to the mitochondrial carrier (TC 2.A.29) family. (322 aa)
	T310_6344	CP2 transcription factor. (755 aa)
	T310_6328	Ribosomal protein S8; Belongs to the universal ribosomal protein uS8 family. (130 aa)
	T310_6294	Uncharacterized protein. (447 aa)
	T310_5755	60S ribosomal protein L28. (152 aa)
	T310_6250	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (1660 aa)
	T310_5461	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (237 aa)
	T310_5446	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (410 aa)
	T310_5276	Uncharacterized protein. (279 aa)
	T310_5381	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family. (441 aa)
	T310_5822	Ribosomal protein S13p/S18e; Belongs to the universal ribosomal protein uS13 family. (180 aa)
	T310_5135	40S ribosomal protein S19. (218 aa)
	T310_5114	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (133 aa)
	T310_5795	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (99 aa)
	T310_5410	Uncharacterized protein. (262 aa)
	T310_4911	UPF0132 domain protein. (150 aa)
	T310_5467	50S ribosomal protein L24. (224 aa)
	T310_4775	Cytochrome b561 domain-containing protein. (243 aa)
	T310_5379	RNA polymerase II transcription factor SIII (Elongin) subunit A. (411 aa)
	T310_4759	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (215 aa)
	T310_4861	Uncharacterized protein. (92 aa)
	T310_4683	Uncharacterized protein. (175 aa)
	T310_4623	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (103 aa)
	T310_4773	60S ribosomal protein L10. (224 aa)
	T310_4445	60S acidic ribosomal protein P1; Belongs to the eukaryotic ribosomal protein P1/P2 family. (127 aa)
	T310_4910	DASH complex subunit Duo1. (245 aa)
	T310_4489	Uncharacterized protein. (658 aa)
	T310_4500	37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family. (411 aa)
	T310_4345	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (223 aa)
	T310_4279	Uncharacterized protein. (358 aa)
	T310_4298	60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family. (164 aa)
	T310_4640	Ribosomal protein L34. (144 aa)
	T310_4616	Mitochondrial carrier protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (399 aa)
	T310_4333	60S ribosomal protein L30. (106 aa)
	T310_4582	Uncharacterized protein. (461 aa)
	T310_4821	ZIP metal ion transporter. (547 aa)
	T310_4120	60S ribosomal protein L23. (196 aa)
	T310_4056	50S ribosomal subunit L7. (356 aa)
	T310_4071	60S ribosomal protein L8. (254 aa)
	RPS1	40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family. (275 aa)
	T310_4464	KOW motif domain protein. (355 aa)
	T310_4429	60S ribosomal protein L6; Belongs to the universal ribosomal protein uL6 family. (276 aa)
	T310_3829	Complex: RPS28B. (95 aa)
	T310_4192	60S ribosomal protein L30. (110 aa)
	T310_3373	60S ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family. (150 aa)
	T310_3933	60S ribosomal protein L13. (251 aa)
	T310_3958	Cytochrome c oxidase assembly protein cox16, mitochondrial. (168 aa)
	T310_3402	Uncharacterized protein. (372 aa)
	T310_3214	Uncharacterized protein. (263 aa)
	T310_3381	Alkaline serine protease; Belongs to the universal ribosomal protein uL14 family. (140 aa)
	T310_3837	60S ribosomal protein L7. (251 aa)
	T310_3362	N-acetyltransferase domain-containing protein. (269 aa)
	T310_3403	Uncharacterized protein. (855 aa)
	T310_3148	40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family. (162 aa)
	T310_3328	Electron transfer flavoprotein alpha subunit. (349 aa)
	T310_2875	Glyco_hydro_cc domain-containing protein. (287 aa)
	T310_2924	40S ribosomal protein S10-B. (153 aa)
	T310_2694	37S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (358 aa)
	T310_2960	60S ribosomal protein L31. (123 aa)
	T310_2640	Metallo-beta-lactamase superfamily protein. (291 aa)
	T310_2553	Cytochrome b561 domain-containing protein. (418 aa)
	RPS0	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (301 aa)
	T310_2521	60S ribosomal protein L9-B. (584 aa)
	T310_2897	Uncharacterized protein. (269 aa)
	T310_2937	Cytosolic large ribosomal subunit protein L7A. (413 aa)
	T310_2127	COP9 signalosome subunit CsnD. (421 aa)
	T310_1989	37S ribosomal protein S11. (237 aa)
	T310_1930	60S ribosomal protein L32. (131 aa)
	T310_2539	Uncharacterized protein. (433 aa)
	T310_2457	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family. (259 aa)
	T310_2375	30S ribosomal protein S15. (309 aa)
	T310_2296	Zn(2)-C6 fungal-type domain-containing protein. (909 aa)
	T310_1803	40S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (215 aa)
	T310_1192	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (119 aa)
	T310_1090	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (146 aa)
	T310_1055	50S ribosomal protein L12. (200 aa)
	T310_1006	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (217 aa)
	T310_1393	Ribosomal protein L14. (254 aa)
	T310_1056	Uncharacterized protein. (601 aa)
	T310_1517	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. (958 aa)
	T310_1211	40S ribosomal protein S2. (323 aa)
	T310_1080	50S ribosomal subunit protein L15. (307 aa)
	T310_0600	50S ribosomal protein L13. (166 aa)
	T310_0570	Glycosyl transferase. (173 aa)
	T310_0876	60S ribosomal protein L20; Belongs to the eukaryotic ribosomal protein eL20 family. (180 aa)
	T310_0498	Uncharacterized protein. (599 aa)
	T310_0508	60S ribosomal protein L16; Belongs to the universal ribosomal protein uL13 family. (184 aa)
	T310_0916	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (312 aa)
	T310_0468	40S ribosomal protein S20. (213 aa)
	T310_1089	Uncharacterized protein. (248 aa)
	T310_0419	Aconitate hydratase. (266 aa)
	T310_1049	30S ribosomal subunit S4. (989 aa)
	T310_0603	40S ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	T310_0801	Uncharacterized protein. (320 aa)
	T310_0938	Uncharacterized protein. (299 aa)
	T310_0958	60S ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (165 aa)
	T310_0390	60S ribosomal protein L33. (109 aa)
	T310_0369	BZIP domain-containing protein. (337 aa)
	T310_0044	40S ribosomal protein S15; Belongs to the eukaryotic ribosomal protein P1/P2 family. (334 aa)
	T310_0601	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (143 aa)
	T310_0024	MYB DNA-binding domain protein. (689 aa)
	T310_0418	Ribosome biogenesis protein NSA2. (258 aa)
	T310_0142	tRNA (Uracil-O(2)-)-methyltransferase. (428 aa)
	T310_0020	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (263 aa)

Your Current Organism:

Rasamsonia emersonii

NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RPS0	RPS1	A0A0F4YZB2	A0A0F4YUF0	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family.	0.999
RPS0	T310_0020	A0A0F4YZB2	A0A0F4Z753	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.999
RPS0	T310_0024	A0A0F4YZB2	A0A0F4Z6G6	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	MYB DNA-binding domain protein.	0.994
RPS0	T310_0044	A0A0F4YZB2	A0A0F4Z5T7	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	40S ribosomal protein S15; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.999
RPS0	T310_0369	A0A0F4YZB2	A0A0F4Z5Q1	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	BZIP domain-containing protein.	0.991
RPS0	T310_0390	A0A0F4YZB2	A0A0F4Z5G7	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	60S ribosomal protein L33.	0.998
RPS0	T310_0418	A0A0F4YZB2	A0A0F4Z6M7	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Ribosome biogenesis protein NSA2.	0.941
RPS0	T310_0419	A0A0F4YZB2	A0A0F4Z4T2	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Aconitate hydratase.	0.536
RPS0	T310_0468	A0A0F4YZB2	A0A0F4Z4Q5	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	40S ribosomal protein S20.	0.999
RPS0	T310_0498	A0A0F4YZB2	A0A0F4Z4L7	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Uncharacterized protein.	0.999
RPS0	T310_0508	A0A0F4YZB2	A0A0F4Z4M6	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	60S ribosomal protein L16; Belongs to the universal ribosomal protein uL13 family.	0.998
RPS0	T310_0570	A0A0F4YZB2	A0A0F4Z4F0	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Glycosyl transferase.	0.997
RPS0	T310_0600	A0A0F4YZB2	A0A0F4Z4A7	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	50S ribosomal protein L13.	0.945
RPS0	T310_0601	A0A0F4YZB2	A0A0F4Z659	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.999
RPS0	T310_0603	A0A0F4YZB2	A0A0F4Z4V4	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	40S ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family.	0.999
RPS0	T310_0801	A0A0F4YZB2	A0A0F4Z516	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Uncharacterized protein.	0.994
RPS0	T310_0876	A0A0F4YZB2	A0A0F4Z4I9	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	60S ribosomal protein L20; Belongs to the eukaryotic ribosomal protein eL20 family.	0.998
RPS0	T310_0916	A0A0F4YZB2	A0A0F4Z4N1	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.998
RPS0	T310_0938	A0A0F4YZB2	A0A0F4Z5A5	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Uncharacterized protein.	0.428
RPS0	T310_0958	A0A0F4YZB2	A0A0F4Z5C7	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	60S ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.	0.985