(38 nodes) RNA polymerase network (Rasamsonia emersonii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T310_4420	Uncharacterized protein. (908 aa)
	T310_10008	Uncharacterized protein. (288 aa)
	T310_9600	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1449 aa)
	T310_9351	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (119 aa)
	T310_8406	Transcription elongation factor S-II. (296 aa)
	T310_7476	RNA polymerase I subunit Rpa43. (425 aa)
	T310_7125	G2/M phase checkpoint control protein Sum2. (196 aa)
	T310_6931	Uncharacterized protein. (541 aa)
	T310_7044	DNA directed RNA polymerase II 15 kDa subunit. (132 aa)
	T310_6932	DNA-directed RNA polymerase. (217 aa)
	T310_6753	G2/M phase checkpoint control protein Sum2. (366 aa)
	T310_6564	DPH-type MB domain-containing protein. (438 aa)
	T310_5801	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1695 aa)
	T310_6141	Uncharacterized protein. (163 aa)
	T310_5187	DNA-directed RNA polymerase. (339 aa)
	T310_5542	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1241 aa)
	T310_5092	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (358 aa)
	T310_4848	DNA-directed RNA polymerase. (133 aa)
	T310_4079	DNA-directed RNA polymerase. (498 aa)
	T310_4022	Uncharacterized protein. (650 aa)
	T310_4023	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (250 aa)
	T310_3755	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1224 aa)
	T310_3767	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (639 aa)
	T310_2858	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1234 aa)
	T310_1913	DNA-directed RNA polymerase III RPC4. (259 aa)
	T310_1935	Endonuclease/exonuclease/phosphatase family protein. (342 aa)
	T310_1779	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1743 aa)
	T310_1521	SAGA complex subunit (Ada2). (688 aa)
	T310_2084	ARS binding protein Abp2. (690 aa)
	T310_1735	DNA-directed RNA polymerase. (235 aa)
	T310_1269	DNA-directed RNA polymerase. (374 aa)
	T310_1449	DNA-directed RNA polymerase. (140 aa)
	T310_0577	RBR-type E3 ubiquitin transferase. (662 aa)
	T310_0493	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (117 aa)
	T310_0923	DNA-directed RNA polymerase. (160 aa)
	T310_0679	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (130 aa)
	T310_0290	Urease accessory protein UreD. (342 aa)
	T310_0281	DNA-directed RNA polymerase III RPC4. (240 aa)

Your Current Organism:

Rasamsonia emersonii

NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T310_0281	T310_0493	A0A0F4Z6E1	A0A0F4Z4L0	DNA-directed RNA polymerase III RPC4.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.972
T310_0281	T310_0679	A0A0F4Z6E1	A0A0F4Z5B0	DNA-directed RNA polymerase III RPC4.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.970
T310_0281	T310_0923	A0A0F4Z6E1	A0A0F4Z590	DNA-directed RNA polymerase III RPC4.	DNA-directed RNA polymerase.	0.968
T310_0281	T310_10008	A0A0F4Z6E1	A0A0F4YEN2	DNA-directed RNA polymerase III RPC4.	Uncharacterized protein.	0.979
T310_0281	T310_1269	A0A0F4Z6E1	A0A0F4Z306	DNA-directed RNA polymerase III RPC4.	DNA-directed RNA polymerase.	0.973
T310_0281	T310_1449	A0A0F4Z6E1	A0A0F4Z3S4	DNA-directed RNA polymerase III RPC4.	DNA-directed RNA polymerase.	0.964
T310_0281	T310_1735	A0A0F4Z6E1	A0A0F4Z293	DNA-directed RNA polymerase III RPC4.	DNA-directed RNA polymerase.	0.969
T310_0281	T310_1913	A0A0F4Z6E1	A0A0F4Z0I0	DNA-directed RNA polymerase III RPC4.	DNA-directed RNA polymerase III RPC4.	0.899
T310_0281	T310_2858	A0A0F4Z6E1	A0A0F4YXX9	DNA-directed RNA polymerase III RPC4.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.903
T310_0281	T310_3755	A0A0F4Z6E1	A0A0F4YWI6	DNA-directed RNA polymerase III RPC4.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.971
T310_0281	T310_3767	A0A0F4Z6E1	A0A0F4YX64	DNA-directed RNA polymerase III RPC4.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.974
T310_0281	T310_4022	A0A0F4Z6E1	A0A0F4YV23	DNA-directed RNA polymerase III RPC4.	Uncharacterized protein.	0.916
T310_0281	T310_4023	A0A0F4Z6E1	A0A0F4YVT0	DNA-directed RNA polymerase III RPC4.	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	0.944
T310_0281	T310_4079	A0A0F4Z6E1	A0A0F4YUY7	DNA-directed RNA polymerase III RPC4.	DNA-directed RNA polymerase.	0.457
T310_0281	T310_5092	A0A0F4Z6E1	A0A0F4YSP5	DNA-directed RNA polymerase III RPC4.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.972
T310_0281	T310_5187	A0A0F4Z6E1	A0A0F4YR68	DNA-directed RNA polymerase III RPC4.	DNA-directed RNA polymerase.	0.911
T310_0281	T310_5542	A0A0F4Z6E1	A0A0F4YS24	DNA-directed RNA polymerase III RPC4.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.898
T310_0281	T310_5801	A0A0F4Z6E1	A0A0F4YPM7	DNA-directed RNA polymerase III RPC4.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.920
T310_0281	T310_7044	A0A0F4Z6E1	A0A0F4YLJ5	DNA-directed RNA polymerase III RPC4.	DNA directed RNA polymerase II 15 kDa subunit.	0.851
T310_0281	T310_7476	A0A0F4Z6E1	A0A0F4YKA5	DNA-directed RNA polymerase III RPC4.	RNA polymerase I subunit Rpa43.	0.452