122 items (Rasamsonia emersonii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T310_2027	Uncharacterized protein. (614 aa)
	T310_10120	RNA helicase. (450 aa)
	T310_10106	RNA binding protein. (294 aa)
	T310_10017	DUF866 domain protein. (160 aa)
	T310_9844	CID domain-containing protein. (540 aa)
	T310_9629	Splicing factor 3b, subunit 2. (558 aa)
	T310_9511	Cell cycle control protein (Cwf4). (775 aa)
	T310_9468	RNA helicase; Belongs to the DEAD box helicase family. (501 aa)
	T310_9561	Sm domain-containing protein. (765 aa)
	T310_9493	Uncharacterized protein. (819 aa)
	T310_9330	Cytomegalovirus gH-receptor family protein. (860 aa)
	T310_9596	2-alkenal reductase; Belongs to the heat shock protein 70 family. (644 aa)
	T310_9356	Cell division control protein (Cdc5). (791 aa)
	T310_9840	HypA-like protein. (1132 aa)
	T310_9510	Pre-mRNA splicing factor (Prp31). (523 aa)
	T310_9257	Pre-mRNA splicing factor. (686 aa)
	T310_9305	mRNA splicing protein. (472 aa)
	T310_8176	G-patch DNA repair protein (Drt111). (533 aa)
	T310_8263	mRNA splicing factor RNA helicase (Prp16). (920 aa)
	T310_8130	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (120 aa)
	T310_7860	Hsp7-like protein; Belongs to the heat shock protein 70 family. (534 aa)
	T310_8244	RNA helicase-like splicing factor (HRH1). (1139 aa)
	T310_7827	CID domain-containing protein. (897 aa)
	T310_7874	DEAD/DEAH box helicase. (907 aa)
	T310_7879	mRNA splicing factor (Prp18). (389 aa)
	T310_7844	MPN domain-containing protein. (2332 aa)
	T310_8367	mRNA splicing factor (Prp17). (582 aa)
	T310_7468	Nuclear mRNA splicing factor. (1209 aa)
	T310_8107	Uncharacterized protein. (446 aa)
	T310_8010	2-alkenal reductase; Belongs to the heat shock protein 70 family. (582 aa)
	T310_8015	U5 snRNP component Snu114. (988 aa)
	T310_7314	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (160 aa)
	T310_7884	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	T310_6773	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (186 aa)
	T310_6555	DNA binding protein SART-1. (729 aa)
	T310_6552	Sodium-exporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. (1150 aa)
	T310_6954	PWI domain-containing protein. (568 aa)
	T310_6511	Uncharacterized protein. (1317 aa)
	T310_6886	Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family. (165 aa)
	T310_7082	Splicing factor 3a subunit 2. (235 aa)
	T310_6385	Microtubule associated protein. (252 aa)
	T310_6863	F-box domain protein. (628 aa)
	T310_6096	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (348 aa)
	T310_6077	Cell cycle control protein (Cwf8). (476 aa)
	T310_6079	U1 small nuclear ribonucleoprotein 70 kDa. (387 aa)
	T310_5811	Uncharacterized protein. (967 aa)
	T310_6165	RNA binding protein. (302 aa)
	T310_5607	Peptidylprolyl isomerase. (576 aa)
	T310_5802	U4/U6 small nuclear ribonucleoprotein. (585 aa)
	T310_5541	Uncharacterized protein. (276 aa)
	T310_5543	DUF1716 domain protein. (613 aa)
	T310_5889	Transcriptional regulator Cwf13/SkiP. (589 aa)
	T310_5397	U5 snRNP complex subunit. (358 aa)
	T310_5521	Cap binding protein. (828 aa)
	T310_5756	Splicing factor 3b subunit 4. (347 aa)
	T310_5714	Zinc transporter (Msc2). (1006 aa)
	T310_5326	U1 small nuclear ribonucleoprotein A. (197 aa)
	T310_5197	Peptidyl prolyl cis-trans isomerase Cyclophilin. (153 aa)
	T310_5307	Uncharacterized protein. (208 aa)
	T310_5116	Uncharacterized protein. (803 aa)
	T310_5445	RNA binding protein SwoK (Eurofung). (221 aa)
	T310_5096	mRNA splicing factor RNA helicase (Cdc28). (1211 aa)
	T310_5308	Uncharacterized protein. (323 aa)
	T310_4807	Uncharacterized protein. (253 aa)
	T310_5407	Uncharacterized protein. (312 aa)
	T310_4636	G-patch domain protein (Spp2). (557 aa)
	T310_4633	Ubiquitin thiolesterase. (645 aa)
	T310_4573	50S ribosomal protein L36. (193 aa)
	T310_5181	WD repeat-containing protein. (466 aa)
	T310_4418	Uncharacterized protein. (579 aa)
	T310_4299	Sm domain-containing protein. (230 aa)
	T310_4763	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (548 aa)
	T310_4019	SAP domain-containing protein. (612 aa)
	T310_4508	Pre-mRNA splicing factor ATP-dependent RNA helicase Prp43. (762 aa)
	T310_4017	THO complex component (Rlr1). (2464 aa)
	T310_4288	U6 snRNA-associated Sm-like protein LSm6. (136 aa)
	T310_3910	THO complex subunit Tho1. (467 aa)
	T310_3632	Pre-RNA splicing factor Slt11. (371 aa)
	T310_3911	Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. (1467 aa)
	T310_4121	Uncharacterized protein. (176 aa)
	T310_3321	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (126 aa)
	T310_3631	Mitochondrial zinc maintenance protein 1, mitochondrial; Belongs to the complex I LYR family. (91 aa)
	T310_3024	Uncharacterized protein. (822 aa)
	T310_3693	U2 auxiliary factor small subunit. (204 aa)
	T310_3713	Uncharacterized protein. (168 aa)
	T310_3111	RNA helicase. (825 aa)
	T310_3604	mRNA splicing factor (Prp1/Zer1). (980 aa)
	T310_3517	Uncharacterized protein. (197 aa)
	T310_3532	mRNA splicing protein (Prp5). (451 aa)
	T310_3200	Small nuclear ribonucleoprotein Sm D2. (176 aa)
	T310_2564	Isy1-like splicing family protein. (254 aa)
	T310_2791	WD_REPEATS_REGION domain-containing protein. (531 aa)
	T310_2125	Uncharacterized protein. (379 aa)
	T310_0755	ATP-dependent RNA helicase (Hrh1). (805 aa)
	T310_0093	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (96 aa)
	T310_1962	RNA helicase. (1227 aa)
	T310_2185	Pre-mRNA splicing helicase. (2143 aa)
	T310_1531	RNA helicase (Dbp); Belongs to the DEAD box helicase family. (657 aa)
	T310_2015	Uncharacterized protein. (205 aa)
	T310_1314	ATP dependent DNA ligase domain protein. (1667 aa)
	T310_1694	Tudor domain-containing protein. (302 aa)
	T310_1825	Uncharacterized protein. (676 aa)
	T310_1315	RNA helicase; Belongs to the DEAD box helicase family. (399 aa)
	T310_1727	C2H2 finger domain protein. (291 aa)
	T310_1115	Uncharacterized protein. (211 aa)
	T310_1210	37S ribosomal protein MRP4. (183 aa)
	T310_1220	Uncharacterized protein. (664 aa)
	T310_0965	Splicing factor 3B subunit 1. (1230 aa)
	T310_1069	Small nuclear ribonucleoprotein Sm D3. (193 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	T310_0852	RRM domain-containing protein. (159 aa)
	T310_0668	DNA repair and transcription protein (Xab2). (822 aa)
	T310_0695	Propanediol-phosphate dehydrogenase. (257 aa)
	T310_1323	Endo-1,3(4)-beta-glucanase. (382 aa)
	T310_0572	SNRNP27 domain-containing protein. (256 aa)
	T310_1223	BCAS2 family protein. (219 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (201 aa)
	T310_0987	Transformer-SR ribonucleoprotein. (290 aa)
	T310_0657	C2H2 finger domain protein. (210 aa)
	T310_1059	SYF2 splicing factor domain protein. (400 aa)
	T310_0317	RNA annealing protein Yra1. (278 aa)
	T310_0205	Uncharacterized protein. (631 aa)

Your Current Organism:

Rasamsonia emersonii

NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM5	LSM8	A0A0F4Z4I0	A0A0F4Z3P5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM5	T310_0093	A0A0F4Z4I0	A0A0F4Z6D5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.989
LSM5	T310_0572	A0A0F4Z4I0	A0A0F4Z4D3	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	SNRNP27 domain-containing protein.	0.864
LSM5	T310_0695	A0A0F4Z4I0	A0A0F4Z448	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Propanediol-phosphate dehydrogenase.	0.904
LSM5	T310_0965	A0A0F4Z4I0	A0A0F4Z375	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Splicing factor 3B subunit 1.	0.912
LSM5	T310_10017	A0A0F4Z4I0	A0A0F4YE43	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	DUF866 domain protein.	0.968
LSM5	T310_10120	A0A0F4Z4I0	A0A0F4YDJ4	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	RNA helicase.	0.562
LSM5	T310_1069	A0A0F4Z4I0	A0A0F4Z3H8	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Small nuclear ribonucleoprotein Sm D3.	0.988
LSM5	T310_1314	A0A0F4Z4I0	A0A0F4Z2B6	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	ATP dependent DNA ligase domain protein.	0.885
LSM5	T310_1315	A0A0F4Z4I0	A0A0F4Z2T3	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	RNA helicase; Belongs to the DEAD box helicase family.	0.542
LSM5	T310_1531	A0A0F4Z4I0	A0A0F4Z1V8	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	RNA helicase (Dbp); Belongs to the DEAD box helicase family.	0.542
LSM5	T310_1727	A0A0F4Z4I0	A0A0F4Z2U0	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	C2H2 finger domain protein.	0.929
LSM5	T310_1962	A0A0F4Z4I0	A0A0F4Z0T4	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	RNA helicase.	0.551
LSM5	T310_2125	A0A0F4Z4I0	A0A0F4Z0F8	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Uncharacterized protein.	0.980
LSM5	T310_2185	A0A0F4Z4I0	A0A0F4Z1J7	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Pre-mRNA splicing helicase.	0.982
LSM5	T310_2791	A0A0F4Z4I0	A0A0F4Z005	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	WD_REPEATS_REGION domain-containing protein.	0.969
LSM5	T310_3111	A0A0F4Z4I0	A0A0F4YXP7	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	RNA helicase.	0.822
LSM5	T310_3200	A0A0F4Z4I0	A0A0F4YYP6	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Small nuclear ribonucleoprotein Sm D2.	0.989
LSM5	T310_3321	A0A0F4Z4I0	A0A0F4YWP7	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.945
LSM5	T310_3532	A0A0F4Z4I0	A0A0F4YXU6	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	mRNA splicing protein (Prp5).	0.649