54 items (Rasamsonia emersonii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T310_2745	RNA helicase. (770 aa)
	T310_2685	Uncharacterized protein. (441 aa)
	T310_2476	DNA damage response protein RcaA. (706 aa)
	T310_2679	DNA repair protein (Rad57). (527 aa)
	T310_2355	Uncharacterized protein. (211 aa)
	T310_2902	DsDNA-dependent ATPase Rad54. (855 aa)
	T310_2409	Uncharacterized protein. (394 aa)
	T310_2419	Uncharacterized protein. (301 aa)
	T310_2308	RecQ family helicase MusN. (1607 aa)
	T310_1894	Peptidyl-prolyl cis-trans isomerase-like 3. (135 aa)
	T310_1906	ERCC4 domain-containing protein. (662 aa)
	T310_2055	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (512 aa)
	T310_1812	DsDNA-dependent ATPase (Rad54b). (1023 aa)
	T310_2028	PITH domain-containing protein. (228 aa)
	T310_1942	DNA polymerase. (1105 aa)
	T310_0780	SsDNA binding protein. (113 aa)
	T310_1343	HD superfamily hydrolase. (638 aa)
	T310_0415	Uncharacterized protein. (280 aa)
	T310_0188	Telomere silencing protein Zds1. (1122 aa)
	T310_0105	RECA_2 domain-containing protein. (414 aa)
	T310_0443	Reverse transcriptase domain-containing protein. (206 aa)
	T310_3451	Gag/polymerase/env polyprotein. (273 aa)
	T310_3071	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (791 aa)
	T310_3202	SsDNA binding protein Ssb3. (154 aa)
	T310_3196	Serine/threonine-protein kinase Tel1; Serine/threonine protein kinase which activates checkpoint signaling upon genotoxic stresses such as ionizing radiation (IR), ultraviolet light (UV), or DNA replication stalling, thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]- Q. Phosphorylates histone H2A to form H2AS128ph (gamma-H2A) at sites of DNA damage, involved in the regulation of DNA damage response mechanism. Required for the control of telomere length and genome stability; Belongs to the PI3/PI4-kinase family. ATM subfamily. (2886 aa)
	T310_4327	Transposon-encoded protein with TYA. (1466 aa)
	T310_4354	Uncharacterized protein. (184 aa)
	T310_3879	Retrovirus polyprotein. (533 aa)
	T310_3880	Gag/polymerase/env polyprotein. (909 aa)
	T310_4039	SNF2 family helicase/ATPase. (1836 aa)
	T310_4195	Uncharacterized protein. (1557 aa)
	T310_4369	TPR domain protein. (487 aa)
	T310_5236	DNA repair protein Rad50. (1270 aa)
	T310_5437	mRNA splicing protein Yju2. (272 aa)
	T310_6091	BRCT domain protein. (831 aa)
	PIF1	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability. (709 aa)
	T310_6205	Integrase catalytic domain-containing protein. (187 aa)
	T310_6447	Smr domain protein. (220 aa)
	T310_6498	DNA repair protein Mus81. (980 aa)
	T310_6493	UDP-galactopyranose mutase. (532 aa)
	T310_7335	Lectin C-type domain protein. (556 aa)
	T310_6649	Putative replication factor-a protein. (291 aa)
	T310_6788	Uncharacterized protein. (446 aa)
	T310_7109	DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (646 aa)
	T310_8075	DNA-directed DNA polymerase. (546 aa)
	T310_8122	RAD52 DNA repair protein RADC. (606 aa)
	T310_8628	Pol polyprotein. (142 aa)
	T310_8931	Uncharacterized protein. (135 aa)
	T310_9467	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (594 aa)
	T310_9458	Uncharacterized protein. (117 aa)
	T310_9486	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily. (344 aa)
	T310_9732	Transposon-encoded protein with TYA. (603 aa)
	T310_9954	Integrase catalytic domain-containing protein. (579 aa)
	T310_9866	Integrase catalytic domain-containing protein. (1257 aa)

Your Current Organism:

Rasamsonia emersonii

NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PIF1	T310_0105	A0A0F4YPA8	A0A0F4Z5W9	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	RECA_2 domain-containing protein.	0.512
PIF1	T310_0415	A0A0F4YPA8	A0A0F4Z5B8	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	Uncharacterized protein.	0.489
PIF1	T310_0780	A0A0F4YPA8	A0A0F4Z3U9	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	SsDNA binding protein.	0.538
PIF1	T310_1812	A0A0F4YPA8	A0A0F4Z1D7	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	DsDNA-dependent ATPase (Rad54b).	0.482
PIF1	T310_1942	A0A0F4YPA8	A0A0F4Z1P5	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	DNA polymerase.	0.512
PIF1	T310_2055	A0A0F4YPA8	A0A0F4Z1C9	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.753
PIF1	T310_2308	A0A0F4YPA8	A0A0F4Z003	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	RecQ family helicase MusN.	0.753
PIF1	T310_2409	A0A0F4YPA8	A0A0F4YZM8	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	Uncharacterized protein.	0.489
PIF1	T310_2679	A0A0F4YPA8	A0A0F4YZ08	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	DNA repair protein (Rad57).	0.501
PIF1	T310_2902	A0A0F4YPA8	A0A0F4YZF4	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	DsDNA-dependent ATPase Rad54.	0.482
PIF1	T310_3071	A0A0F4YPA8	A0A0F4YXT6	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.604
PIF1	T310_3196	A0A0F4YPA8	A0A0F4YX23	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	Serine/threonine-protein kinase Tel1; Serine/threonine protein kinase which activates checkpoint signaling upon genotoxic stresses such as ionizing radiation (IR), ultraviolet light (UV), or DNA replication stalling, thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]- Q. Phosphorylates histone H2A to form H2AS128ph (gamma-H2A) at sites of DNA damage, involved in the regulation of DNA damage response mechanism. Required for the control of telomere length and genome stability; Belongs to the PI3/PI4-kinase family. ATM subfamily.	0.509
PIF1	T310_5236	A0A0F4YPA8	A0A0F4YSY8	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	DNA repair protein Rad50.	0.654
PIF1	T310_6498	A0A0F4YPA8	A0A0F4YML0	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	DNA repair protein Mus81.	0.558
PIF1	T310_6649	A0A0F4YPA8	A0A0F4YM50	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	Putative replication factor-a protein.	0.549
PIF1	T310_6788	A0A0F4YPA8	A0A0F4YLZ6	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	Uncharacterized protein.	0.641
PIF1	T310_7109	A0A0F4YPA8	A0A0F4YLE9	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family.	0.668
PIF1	T310_8122	A0A0F4YPA8	A0A0F4YI22	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	RAD52 DNA repair protein RADC.	0.851
PIF1	T310_9467	A0A0F4YPA8	A0A0F4YG46	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.796
PIF1	T310_9486	A0A0F4YPA8	A0A0F4YF60	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily.	0.796