65 items (Pneumocystis jirovecii RU7) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T551_00847	Polyubiquitin. (181 aa)
	T551_03650	Uncharacterized protein. (1052 aa)
	T551_03621	RPOLD domain-containing protein. (297 aa)
	T551_03593	DNA-directed RNA polymerase II subunit rpb7. (182 aa)
	T551_03430	CYCLIN domain-containing protein; Belongs to the cyclin family. (349 aa)
	T551_03325	DNA-directed RNA polymerase I, II, and III subunit RPABC4. (68 aa)
	T551_03374	Transcription elongation factor S-II. (288 aa)
	T551_03382	AAA domain-containing protein. (361 aa)
	T551_03113	CPSF_A domain-containing protein. (1093 aa)
	T551_03135	Uncharacterized protein. (146 aa)
	T551_03155	CBFD_NFYB_HMF domain-containing protein. (152 aa)
	T551_03140	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (126 aa)
	T551_02953	Protein kinase domain-containing protein. (344 aa)
	T551_03015	Uncharacterized protein. (307 aa)
	T551_02820	Uncharacterized protein. (351 aa)
	T551_02853	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (250 aa)
	T551_02864	RPOL9 domain-containing protein. (103 aa)
	T551_02613	Uncharacterized protein. (103 aa)
	T551_02761	Uncharacterized protein. (339 aa)
	T551_02283	Replication factor C subunit 4. (351 aa)
	T551_02339	Uncharacterized protein. (235 aa)
	T551_02081	Uncharacterized protein. (69 aa)
	T551_02136	Uncharacterized protein. (248 aa)
	T551_02170	Uncharacterized protein. (265 aa)
	T551_01874	Uncharacterized protein. (200 aa)
	T551_01969	DNA_LIGASE_A3 domain-containing protein; Belongs to the ATP-dependent DNA ligase family. (708 aa)
	T551_01988	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (447 aa)
	T551_02044	DNA polymerase. (1088 aa)
	T551_01745	Uncharacterized protein. (211 aa)
	T551_01770	CDK-activating kinase assembly factor MAT1. (326 aa)
	T551_01791	Zds_C domain-containing protein. (750 aa)
	T551_01797	TFIIS central domain-containing protein. (878 aa)
	T551_01850	Replication factor C subunit 3. (356 aa)
	T551_01849	DNA repair protein. (297 aa)
	T551_01442	Uncharacterized protein. (426 aa)
	T551_01453	RPOL4c domain-containing protein. (149 aa)
	T551_01564	CULLIN_2 domain-containing protein; Belongs to the cullin family. (820 aa)
	T551_01639	Uncharacterized protein. (161 aa)
	T551_01210	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (598 aa)
	T551_01220	Uncharacterized protein. (264 aa)
	T551_01233	DNA_pol_E_B domain-containing protein. (634 aa)
	T551_01221	Uncharacterized protein. (442 aa)
	T551_01314	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2179 aa)
	T551_01394	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1771 aa)
	T551_01406	PCI domain-containing protein. (434 aa)
	T551_00918	Uncharacterized protein. (818 aa)
	T551_00929	Ubiquitin-40S ribosomal protein S27a. (153 aa)
	T551_01049	DNA repair helicase rad15. (784 aa)
	T551_01103	Uncharacterized protein. (1045 aa)
	T551_01119	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (457 aa)
	T551_01118	Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. (1366 aa)
	T551_00772	RRM domain-containing protein. (149 aa)
	T551_00797	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1218 aa)
	T551_00843	Uncharacterized protein. (467 aa)
	T551_00347	DNA-directed RNA polymerase I, II, and III subunit RPABC5. (72 aa)
	T551_05052	RPA_C domain-containing protein. (294 aa)
	T551_00487	Uncharacterized protein; Belongs to the peptidase C19 family. (1123 aa)
	T551_00518	RNA_pol_L_2 domain-containing protein. (122 aa)
	T551_00530	PCI domain-containing protein. (420 aa)
	T551_00543	Replication factor C subunit 1. (960 aa)
	T551_00033	E3 ubiquitin-protein ligase RBX1. (148 aa)
	T551_00087	WD_REPEATS_REGION domain-containing protein. (499 aa)
	T551_00133	Uncharacterized protein. (844 aa)
	T551_00218	ERCC4 domain-containing protein. (919 aa)
	T551_00304	Uncharacterized protein. (1037 aa)

Your Current Organism:

Pneumocystis jirovecii RU7

NCBI taxonomy Id: 1408657
Other names: P. jirovecii RU7

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T551_00033	T551_00133	A0A0W4ZW10	A0A0W4ZW87	E3 ubiquitin-protein ligase RBX1.	Uncharacterized protein.	0.663
T551_00033	T551_00218	A0A0W4ZW10	A0A0W4ZWI9	E3 ubiquitin-protein ligase RBX1.	ERCC4 domain-containing protein.	0.636
T551_00033	T551_00347	A0A0W4ZW10	A0A0W4ZV84	E3 ubiquitin-protein ligase RBX1.	DNA-directed RNA polymerase I, II, and III subunit RPABC5.	0.878
T551_00033	T551_00518	A0A0W4ZW10	A0A0W4ZVP6	E3 ubiquitin-protein ligase RBX1.	RNA_pol_L_2 domain-containing protein.	0.839
T551_00033	T551_00530	A0A0W4ZW10	A0A0W4ZVP7	E3 ubiquitin-protein ligase RBX1.	PCI domain-containing protein.	0.955
T551_00033	T551_00543	A0A0W4ZW10	A0A0W4ZVQ2	E3 ubiquitin-protein ligase RBX1.	Replication factor C subunit 1.	0.631
T551_00033	T551_00797	A0A0W4ZW10	A0A0W4ZUU8	E3 ubiquitin-protein ligase RBX1.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.849
T551_00033	T551_00843	A0A0W4ZW10	A0A0W4ZUV7	E3 ubiquitin-protein ligase RBX1.	Uncharacterized protein.	0.629
T551_00033	T551_00847	A0A0W4ZW10	A0A0W4ZUV9	E3 ubiquitin-protein ligase RBX1.	Polyubiquitin.	0.913
T551_00033	T551_00929	A0A0W4ZW10	A0A0W4ZTK0	E3 ubiquitin-protein ligase RBX1.	Ubiquitin-40S ribosomal protein S27a.	0.919
T551_00033	T551_01049	A0A0W4ZW10	A0A0W4ZTS7	E3 ubiquitin-protein ligase RBX1.	DNA repair helicase rad15.	0.645
T551_00033	T551_01103	A0A0W4ZW10	A0A0W4ZTX8	E3 ubiquitin-protein ligase RBX1.	Uncharacterized protein.	0.844
T551_00033	T551_01119	A0A0W4ZW10	A0A0W4ZTZ6	E3 ubiquitin-protein ligase RBX1.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.609
T551_00033	T551_01220	A0A0W4ZW10	A0A0W4ZRZ9	E3 ubiquitin-protein ligase RBX1.	Uncharacterized protein.	0.848
T551_00033	T551_01221	A0A0W4ZW10	A0A0W4ZS13	E3 ubiquitin-protein ligase RBX1.	Uncharacterized protein.	0.848
T551_00033	T551_01233	A0A0W4ZW10	A0A0W4ZS02	E3 ubiquitin-protein ligase RBX1.	DNA_pol_E_B domain-containing protein.	0.834
T551_00033	T551_01314	A0A0W4ZW10	A0A0W4ZS83	E3 ubiquitin-protein ligase RBX1.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.840
T551_00033	T551_01394	A0A0W4ZW10	A0A0W4ZSH5	E3 ubiquitin-protein ligase RBX1.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.861
T551_00033	T551_01406	A0A0W4ZW10	A0A0W4ZSH8	E3 ubiquitin-protein ligase RBX1.	PCI domain-containing protein.	0.946
T551_00033	T551_01442	A0A0W4ZW10	A0A0W4ZR83	E3 ubiquitin-protein ligase RBX1.	Uncharacterized protein.	0.805