STRINGSTRING
wzc_2 wzc_2 GCA_001590885_00180 GCA_001590885_00180 GCA_001590885_03272 GCA_001590885_03272 GCA_001590885_03273 GCA_001590885_03273 wzc_1 wzc_1 GCA_001590885_03275 GCA_001590885_03275 wcaJ wcaJ rffG_1 rffG_1 rmlA2 rmlA2 rmlC rmlC rfbD rfbD GCA_001590885_03282 GCA_001590885_03282 wbbL wbbL
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
wzc_2Unannotated protein. (726 aa)
GCA_001590885_00180Unannotated protein. (369 aa)
GCA_001590885_03272Unannotated protein. (378 aa)
GCA_001590885_03273Unannotated protein. (122 aa)
wzc_1Unannotated protein. (724 aa)
GCA_001590885_03275Unannotated protein. (307 aa)
wcaJUnannotated protein. (477 aa)
rffG_1Unannotated protein; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily. (354 aa)
rmlA2Unannotated protein; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family. (289 aa)
rmlCUnannotated protein; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. (178 aa)
rfbDUnannotated protein; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family. (287 aa)
GCA_001590885_03282Unannotated protein. (401 aa)
wbbLUnannotated protein. (277 aa)
Your Current Organism:
Serratia ficaria
NCBI taxonomy Id: 1411141
Other names: S. ficaria NBRC 102596, Serratia ficaria NBRC 102596
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