(5 nodes) Cobalamin-independent synthase, Catalytic domain, and Homocysteine-binding domain network (Serratia ficaria)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	mdeA	Unannotated protein. (397 aa)
	xecA1	Unannotated protein. (343 aa)
	metE_2	Unannotated protein. (368 aa)
	metK	Unannotated protein; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. (384 aa)
	mmuM	Unannotated protein. (312 aa)

Your Current Organism:

Serratia ficaria

NCBI taxonomy Id: 1411141
Other names: S. ficaria NBRC 102596, Serratia ficaria NBRC 102596

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
mdeA	metE_2	GCA_001590885_00567	GCA_001590885_01724	Unannotated protein.	Unannotated protein.	0.937
mdeA	metK	GCA_001590885_00567	GCA_001590885_03389	Unannotated protein.	Unannotated protein; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.	0.919
mdeA	mmuM	GCA_001590885_00567	GCA_001590885_03865	Unannotated protein.	Unannotated protein.	0.916
mdeA	xecA1	GCA_001590885_00567	GCA_001590885_01539	Unannotated protein.	Unannotated protein.	0.939
metE_2	mdeA	GCA_001590885_01724	GCA_001590885_00567	Unannotated protein.	Unannotated protein.	0.937
metE_2	metK	GCA_001590885_01724	GCA_001590885_03389	Unannotated protein.	Unannotated protein; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.	0.962
metE_2	mmuM	GCA_001590885_01724	GCA_001590885_03865	Unannotated protein.	Unannotated protein.	0.931
metE_2	xecA1	GCA_001590885_01724	GCA_001590885_01539	Unannotated protein.	Unannotated protein.	0.918
metK	mdeA	GCA_001590885_03389	GCA_001590885_00567	Unannotated protein; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.	Unannotated protein.	0.919
metK	metE_2	GCA_001590885_03389	GCA_001590885_01724	Unannotated protein; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.	Unannotated protein.	0.962
metK	mmuM	GCA_001590885_03389	GCA_001590885_03865	Unannotated protein; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.	Unannotated protein.	0.932
metK	xecA1	GCA_001590885_03389	GCA_001590885_01539	Unannotated protein; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.	Unannotated protein.	0.962
mmuM	mdeA	GCA_001590885_03865	GCA_001590885_00567	Unannotated protein.	Unannotated protein.	0.916
mmuM	metE_2	GCA_001590885_03865	GCA_001590885_01724	Unannotated protein.	Unannotated protein.	0.931
mmuM	metK	GCA_001590885_03865	GCA_001590885_03389	Unannotated protein.	Unannotated protein; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.	0.932
mmuM	xecA1	GCA_001590885_03865	GCA_001590885_01539	Unannotated protein.	Unannotated protein.	0.913
xecA1	mdeA	GCA_001590885_01539	GCA_001590885_00567	Unannotated protein.	Unannotated protein.	0.939
xecA1	metE_2	GCA_001590885_01539	GCA_001590885_01724	Unannotated protein.	Unannotated protein.	0.918
xecA1	metK	GCA_001590885_01539	GCA_001590885_03389	Unannotated protein.	Unannotated protein; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.	0.962
xecA1	mmuM	GCA_001590885_01539	GCA_001590885_03865	Unannotated protein.	Unannotated protein.	0.913