STRINGSTRING
oxyR_1 oxyR_1 cysL_3 cysL_3 gltC_1 gltC_1 dmlR_3 dmlR_3 cynR_8 cynR_8
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
oxyR_1Unannotated protein; Belongs to the LysR transcriptional regulatory family. (309 aa)
cysL_3Unannotated protein; Belongs to the LysR transcriptional regulatory family. (308 aa)
gltC_1Unannotated protein; Belongs to the LysR transcriptional regulatory family. (305 aa)
dmlR_3Unannotated protein; Belongs to the LysR transcriptional regulatory family. (304 aa)
cynR_8Unannotated protein; Belongs to the LysR transcriptional regulatory family. (296 aa)
Your Current Organism:
Serratia ficaria
NCBI taxonomy Id: 1411141
Other names: S. ficaria NBRC 102596, Serratia ficaria NBRC 102596
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